Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6547

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14914 and 14915 are separated by 164 nucleotides14915 and 14916 are separated by 800 nucleotides mRNA_6546: 14914 - K01702 LEU1 3-isopropylmalate dehydratase, at 1,050,588 to 1,053,356 14914 mRNA_6547: 14915 - KOG3040 Predicted sugar phosphatase (HAD superfamily), at 1,053,521 to 1,054,436 14915 mRNA_6548: 14916 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 1,055,237 to 1,061,964 14916

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,053,403 - -0.4
1,053,411 - +0.0
1,053,411 - +0.3
1,053,430 - +0.5
1,053,440 - +0.8
1,053,443 + -0.2
1,053,446 + +1.3
1,053,453 - +0.3
1,053,456 - +0.3
1,053,459 + +0.7
1,053,459 - -0.3
1,053,475 - +0.3
1,053,476 + -0.1
1,053,479 + +0.3
1,053,489 + +0.2
1,053,494 + +0.2
1,053,562 - +0.4
1,053,931 - 14915 mRNA_6547 0.45 +0.9
1,054,493 + -0.2
1,054,661 + -0.4
1,054,788 + +0.3
1,054,793 - +0.2
1,054,798 - +0.2
1,054,807 + +1.5
1,054,814 + +0.3
1,054,816 - +0.7
1,054,820 + +0.1
1,054,822 + -0.0
1,054,825 + +1.0
1,054,828 + -2.7
1,054,828 + +1.2
1,054,833 + +0.0
1,054,840 + +0.8
1,054,874 - -0.4
1,054,892 - -0.4
1,054,899 + +1.1
1,054,982 - -1.2
1,054,999 - +0.4
1,055,026 + -0.5
1,055,026 - +1.0
1,055,149 - +0.5
1,055,179 + +0.2

Or see this region's nucleotide sequence