Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6576

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14943 and 14944 are separated by 453 nucleotides14944 and 14945 are separated by 359 nucleotides mRNA_6575: 14943 - KOG0440 Cell cycle-associated protein Mob1-1, at 1,139,810 to 1,140,979 14943 mRNA_6576: 14944 - K14709 SLC39A1_2_3, ZIP1_2_3 solute carrier family 39 (zinc transporter), member 1/2/3, at 1,141,433 to 1,143,037 14944 mRNA_6577: 14945 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013,SUPERFAMILY--SSF54160, at 1,143,397 to 1,147,463 14945

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,141,022 + +0.6
1,141,148 - +0.2
1,141,149 + +0.7
1,141,165 - +0.2
1,141,180 - -0.3
1,141,191 + +0.1
1,141,226 + +0.1
1,141,324 - -0.6
1,141,327 - -0.3
1,141,336 - +0.3
1,141,337 - -0.6
1,141,375 + +0.4
1,141,378 + +1.2
1,141,380 - +0.9
1,141,387 + +0.3
1,141,391 - -0.0
1,141,398 + -1.1
1,141,398 + -0.0
1,141,406 + +0.3
1,141,406 + +0.9
1,141,417 + -0.4
1,141,503 - +0.5
1,141,552 - +0.0
1,141,556 + +0.3
1,141,556 - +0.8
1,141,657 - 14944 mRNA_6576 0.14 +0.5
1,141,658 + 14944 mRNA_6576 0.14 -0.1
1,141,661 - 14944 mRNA_6576 0.14 +0.3
1,141,662 - 14944 mRNA_6576 0.14 +0.2
1,141,682 + 14944 mRNA_6576 0.16 +1.0
1,141,687 - 14944 mRNA_6576 0.16 +0.1
1,141,691 - 14944 mRNA_6576 0.16 -0.1
1,141,697 - 14944 mRNA_6576 0.16 +1.5
1,141,831 - 14944 mRNA_6576 0.25 +0.8
1,142,000 + 14944 mRNA_6576 0.35 +0.4
1,142,116 - 14944 mRNA_6576 0.43 +0.8
1,142,162 + 14944 mRNA_6576 0.45 +0.5
1,142,306 + 14944 mRNA_6576 0.54 +0.2
1,142,381 - 14944 mRNA_6576 0.59 +0.1
1,142,390 + 14944 mRNA_6576 0.60 -0.1
1,142,409 + 14944 mRNA_6576 0.61 +0.8
1,142,535 + 14944 mRNA_6576 0.69 +0.9
1,142,550 + 14944 mRNA_6576 0.70 +0.2
1,142,661 - 14944 mRNA_6576 0.77 -0.6
1,142,860 + 14944 mRNA_6576 0.89 +0.7
1,142,976 - -0.3
1,143,028 + -0.2
1,143,139 + -0.2
1,143,198 + +0.5
1,143,256 - -0.3
1,143,281 - +0.7
1,143,411 + +0.5
1,143,424 - +0.7
1,143,430 - +0.5
1,143,432 + -0.6
1,143,727 - +0.2
1,143,892 - 14945 mRNA_6577 0.12 +0.3
1,143,894 - 14945 mRNA_6577 0.12 -0.2

Or see this region's nucleotide sequence