Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6594

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14961 and 14962 are separated by 355 nucleotides14962 and 14963 are separated by 533 nucleotides mRNA_6593: 14961 - KOG1616 Protein involved in Snf1 protein kinase complex assembly, at 1,181,934 to 1,184,760 14961 mRNA_6594: 14962 - Hypothetical Protein, at 1,185,116 to 1,185,583 14962 mRNA_6595: 14963 - Hypothetical Protein, at 1,186,117 to 1,188,115 14963

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,184,216 + 14961 mRNA_6593 0.81 +0.5
1,184,324 - 14961 mRNA_6593 0.85 +0.5
1,184,360 - 14961 mRNA_6593 0.86 +0.1
1,184,496 + +0.7
1,184,497 + +0.6
1,184,672 + +0.4
1,184,673 - -0.2
1,184,686 + -0.7
1,184,688 + +0.5
1,184,805 - -0.6
1,184,810 - +0.2
1,184,829 + +0.0
1,184,834 - +0.5
1,184,835 - +0.5
1,184,838 + +0.6
1,184,841 - +0.0
1,185,131 + +0.2
1,185,134 + -0.0
1,185,149 + +0.8
1,185,258 - 14962 mRNA_6594 0.30 -0.1
1,185,854 + -1.1
1,185,957 - +0.6
1,185,986 - +0.0
1,186,399 - 14963 mRNA_6595 0.14 +0.5
1,186,412 + 14963 mRNA_6595 0.15 -0.1
1,186,419 + 14963 mRNA_6595 0.15 +0.3
1,186,424 - 14963 mRNA_6595 0.15 +1.4
1,186,425 + 14963 mRNA_6595 0.15 +0.3
1,186,576 + 14963 mRNA_6595 0.23 +0.5

Or see this region's nucleotide sequence