Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6632

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15000 and 15001 are separated by 311 nucleotides mRNA_6632: 15000 - BLAST histone-lysine N-methyltransferase SUV420H [Rhodo..., at 1,294,779 to 1,296,409 15000 mRNA_6633: 15001 - KOG1114 Tripeptidyl peptidase II, at 1,296,721 to 1,300,268 15001

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,293,821 - -0.0
1,294,420 + +0.6
1,294,859 + +0.4
1,295,215 + 15000 mRNA_6632 0.27 +0.4
1,295,291 - 15000 mRNA_6632 0.31 +1.1
1,295,385 - 15000 mRNA_6632 0.37 -1.1
1,295,482 - 15000 mRNA_6632 0.43 +0.2
1,296,009 + 15000 mRNA_6632 0.75 +1.0
1,296,147 - 15000 mRNA_6632 0.84 +0.6
1,296,251 - +0.2
1,296,306 + +1.1
1,296,385 + -0.7
1,296,386 - -0.5
1,296,416 - -0.2
1,296,630 - +0.3
1,296,631 + -1.5
1,296,636 + +0.1
1,296,773 - +0.0
1,296,890 + -0.0
1,296,967 - +0.3
1,296,974 + -0.3

Or see this region's nucleotide sequence