Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6659

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15026 and 15027 are separated by 285 nucleotides15027 and 15028 are separated by 691 nucleotides mRNA_6658: 15026 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-4Fe-4S ferredoxin-type iron-sulfur binding domain profile.-PS51379,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,366,899 to 1,370,407 15026 mRNA_6659: 15027 - K05663 ABC.ATM mitochondrial ABC transporter ATM, at 1,370,693 to 1,373,174 15027 mRNA_6660: 15028 - KOG1342 Histone deacetylase complex, catalytic component RPD3, at 1,373,866 to 1,375,485 15028

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,369,780 - 15026 mRNA_6658 0.82 -0.5
1,369,796 + 15026 mRNA_6658 0.83 -0.5
1,370,018 - 15026 mRNA_6658 0.89 -1.0
1,370,202 - +0.2
1,370,209 + +0.2
1,370,234 - +0.9
1,370,364 - +0.5
1,370,406 + +0.5
1,370,512 - +1.5
1,370,514 + +1.5
1,370,530 + -0.2
1,370,558 + -0.2
1,370,563 - +0.8
1,370,676 - -1.4
1,370,691 - +0.6
1,370,815 + -0.6
1,371,090 + 15027 mRNA_6659 0.16 -1.8
1,373,375 - -2.2
1,373,648 - -1.2
1,373,660 - +0.5
1,373,819 + +0.8
1,373,837 - +0.2
1,373,838 + -0.3
1,373,854 + +0.3
1,373,927 + -1.6
1,373,951 - +1.0
1,373,959 - +0.8
1,373,987 - +0.8
1,373,993 + -0.2
1,373,993 + -1.1

Or see this region's nucleotide sequence