Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6668

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15035 and 15036 are separated by 698 nucleotides15036 and 15037 are separated by 168 nucleotides mRNA_6667: 15035 - Hypothetical Protein, at 1,397,904 to 1,402,835 15035 mRNA_6668: 15036 - K03509 POLH DNA polymerase eta, at 1,403,534 to 1,406,837 15036 mRNA_6669: 15037 - K03564 BCP, PRXQ, DOT5 peroxiredoxin Q/BCP, at 1,407,006 to 1,408,136 15037

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,402,553 - +0.3
1,402,603 - +0.7
1,402,834 - +0.8
1,402,838 - +0.5
1,402,871 - -0.1
1,402,942 - +0.5
1,403,003 - +0.0
1,403,021 - +2.0
1,403,121 - +0.8
1,403,156 - -0.6
1,403,183 + -0.0
1,403,308 - +1.1
1,403,312 - -0.1
1,403,458 + +0.2
1,403,464 - +0.3
1,403,563 + -0.2
1,403,590 - +0.6
1,403,608 + +0.8
1,404,035 - 15036 mRNA_6668 0.15 +1.1
1,404,038 + 15036 mRNA_6668 0.15 -0.5
1,404,169 - 15036 mRNA_6668 0.19 +1.4
1,404,202 + 15036 mRNA_6668 0.20 -0.6
1,404,331 + 15036 mRNA_6668 0.24 -0.3
1,404,777 - 15036 mRNA_6668 0.38 +0.7
1,404,786 - 15036 mRNA_6668 0.38 +0.4
1,404,903 + 15036 mRNA_6668 0.41 +1.7
1,405,081 - 15036 mRNA_6668 0.47 +1.9
1,405,085 + 15036 mRNA_6668 0.47 +0.8
1,405,310 + 15036 mRNA_6668 0.54 +0.4
1,405,373 + 15036 mRNA_6668 0.56 +1.8
1,405,382 - 15036 mRNA_6668 0.56 +1.5
1,405,486 - 15036 mRNA_6668 0.59 -0.1
1,405,490 + 15036 mRNA_6668 0.59 -0.7
1,405,504 - 15036 mRNA_6668 0.60 +1.1
1,405,649 - 15036 mRNA_6668 0.64 -0.0
1,405,912 - 15036 mRNA_6668 0.72 +1.2
1,405,954 - 15036 mRNA_6668 0.73 +0.0
1,406,352 - 15036 mRNA_6668 0.85 +0.5
1,406,384 - 15036 mRNA_6668 0.86 -0.9
1,406,799 - +0.5
1,406,831 - +0.2
1,406,955 + +0.4
1,406,989 + +1.7
1,407,268 + 15037 mRNA_6669 0.23 +0.5
1,407,361 - 15037 mRNA_6669 0.31 +0.6
1,407,460 + 15037 mRNA_6669 0.40 -0.3
1,407,538 - 15037 mRNA_6669 0.47 -0.3
1,407,553 + 15037 mRNA_6669 0.48 +0.1

Or see this region's nucleotide sequence