Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6669

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15036 and 15037 are separated by 168 nucleotides15037 and 15038 are separated by 341 nucleotides mRNA_6668: 15036 - K03509 POLH DNA polymerase eta, at 1,403,534 to 1,406,837 15036 mRNA_6669: 15037 - K03564 BCP, PRXQ, DOT5 peroxiredoxin Q/BCP, at 1,407,006 to 1,408,136 15037 mRNA_6670: 15038 - K03676 grxC, GLRX, GLRX2 glutaredoxin 3, at 1,408,478 to 1,409,380 15038

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,406,352 - 15036 mRNA_6668 0.85 +0.5
1,406,384 - 15036 mRNA_6668 0.86 -0.9
1,406,799 - +0.5
1,406,831 - +0.2
1,406,955 + +0.4
1,406,989 + +1.7
1,407,268 + 15037 mRNA_6669 0.23 +0.5
1,407,361 - 15037 mRNA_6669 0.31 +0.6
1,407,460 + 15037 mRNA_6669 0.40 -0.3
1,407,538 - 15037 mRNA_6669 0.47 -0.3
1,407,553 + 15037 mRNA_6669 0.48 +0.1
1,407,957 - 15037 mRNA_6669 0.84 +0.4
1,408,414 + +0.1
1,408,720 - 15038 mRNA_6670 0.27 +0.2
1,408,853 + 15038 mRNA_6670 0.42 +0.8
1,408,992 - 15038 mRNA_6670 0.57 -0.6

Or see this region's nucleotide sequence