Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6683

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15050 and 15051 are separated by 207 nucleotides15051 and 15052 are separated by 166 nucleotides mRNA_6682: 15050 - HMMPfam-Roadblock/LC7 domain-PF03259,SMART-Roadblock/LC7 domain-SM00960,SUPERFAMILY--SSF103196, at 1,433,664 to 1,434,403 15050 mRNA_6683: 15051 - HMMPfam-Thioesterase-like superfamily-PF13622, at 1,434,611 to 1,435,976 15051 mRNA_6684: 15052 - K04464 MAPK7 mitogen-activated protein kinase 7, at 1,436,143 to 1,438,277 15052

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,433,625 + +0.1
1,434,460 - +0.0
1,434,484 - -0.3
1,434,493 - -0.2
1,434,493 - +0.4
1,434,494 + -0.6
1,434,507 - +1.2
1,434,515 + +1.0
1,434,524 + +0.4
1,434,536 - +0.9
1,434,539 + -0.3
1,434,539 - -0.3
1,434,540 + +0.3
1,434,542 + +0.5
1,434,542 - +1.6
1,434,543 - +1.0
1,434,544 + +0.3
1,434,544 + -1.3
1,434,544 + +0.7
1,434,549 + +0.4
1,434,552 - -0.5
1,434,562 + -0.4
1,434,694 - +0.8
1,434,705 - +0.0
1,434,707 - +1.5
1,434,719 - -0.9
1,434,818 + 15051 mRNA_6683 0.15 +0.4
1,434,823 - 15051 mRNA_6683 0.16 +0.6
1,434,828 - 15051 mRNA_6683 0.16 +1.2
1,434,832 + 15051 mRNA_6683 0.16 +0.1
1,434,832 + 15051 mRNA_6683 0.16 -1.0
1,434,848 + 15051 mRNA_6683 0.17 -0.3
1,434,989 + 15051 mRNA_6683 0.28 +0.5
1,434,993 - 15051 mRNA_6683 0.28 -0.9
1,435,128 - 15051 mRNA_6683 0.38 +0.2
1,435,135 + 15051 mRNA_6683 0.38 +0.5
1,435,427 + 15051 mRNA_6683 0.60 +0.4
1,435,554 + 15051 mRNA_6683 0.69 +1.4
1,435,571 - 15051 mRNA_6683 0.70 +0.4
1,435,718 - 15051 mRNA_6683 0.81 +0.9
1,435,852 - -0.0
1,435,884 + +0.1
1,435,992 + -0.5
1,436,136 - +0.6
1,436,199 + +0.4
1,436,448 + 15052 mRNA_6684 0.14 +0.3
1,436,689 - 15052 mRNA_6684 0.26 +1.7
1,436,692 + 15052 mRNA_6684 0.26 +0.5
1,436,779 + 15052 mRNA_6684 0.30 +0.5
1,436,921 + 15052 mRNA_6684 0.36 +0.1

Or see this region's nucleotide sequence