Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6690

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15057 and 15058 are separated by 434 nucleotides15058 and 15059 are separated by 595 nucleotides mRNA_6689: 15057 - Hypothetical Protein, at 1,445,320 to 1,449,896 15057 mRNA_6690: 15058 - KOG4776 Uncharacterized conserved protein BCNT, at 1,450,331 to 1,454,298 15058 mRNA_6691: 15059 - KOG3010 Methyltransferase, at 1,454,894 to 1,456,156 15059

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,449,829 - -1.5
1,449,975 + -0.1
1,450,045 + +0.3
1,451,710 - 15058 mRNA_6690 0.35 -0.3
1,451,783 + 15058 mRNA_6690 0.37 +0.5
1,451,902 + 15058 mRNA_6690 0.40 +0.4
1,451,907 + 15058 mRNA_6690 0.40 -0.0
1,452,030 - 15058 mRNA_6690 0.43 -1.5
1,452,034 + 15058 mRNA_6690 0.43 +0.1
1,452,037 + 15058 mRNA_6690 0.43 +1.3
1,452,172 - 15058 mRNA_6690 0.46 -0.2
1,452,462 - 15058 mRNA_6690 0.54 +1.7
1,452,464 - 15058 mRNA_6690 0.54 -0.9
1,452,464 + 15058 mRNA_6690 0.54 -0.2
1,452,580 - 15058 mRNA_6690 0.57 +1.5
1,452,595 + 15058 mRNA_6690 0.57 +0.5
1,452,723 - 15058 mRNA_6690 0.60 +1.1
1,452,747 + 15058 mRNA_6690 0.61 +0.6
1,452,749 - 15058 mRNA_6690 0.61 +1.1
1,452,756 - 15058 mRNA_6690 0.61 +0.1
1,452,758 - 15058 mRNA_6690 0.61 +0.7
1,452,765 - 15058 mRNA_6690 0.61 +0.7
1,452,785 - 15058 mRNA_6690 0.62 +1.2
1,452,797 + 15058 mRNA_6690 0.62 +0.0
1,452,811 - 15058 mRNA_6690 0.62 -0.8
1,452,852 + 15058 mRNA_6690 0.64 +0.0
1,452,864 + 15058 mRNA_6690 0.64 +1.3
1,452,878 + 15058 mRNA_6690 0.64 +0.4
1,452,878 + 15058 mRNA_6690 0.64 +1.7
1,452,879 - 15058 mRNA_6690 0.64 +0.8
1,452,887 - 15058 mRNA_6690 0.64 +0.1
1,452,888 - 15058 mRNA_6690 0.64 -0.2
1,452,889 + 15058 mRNA_6690 0.64 -0.6
1,452,889 + 15058 mRNA_6690 0.64 -1.2
1,452,892 - 15058 mRNA_6690 0.65 +0.3
1,452,896 - 15058 mRNA_6690 0.65 -1.3
1,452,896 - 15058 mRNA_6690 0.65 -1.1
1,452,899 + 15058 mRNA_6690 0.65 +1.6
1,452,900 + 15058 mRNA_6690 0.65 -0.4
1,452,907 - 15058 mRNA_6690 0.65 +0.4
1,452,907 - 15058 mRNA_6690 0.65 +0.3
1,452,908 - 15058 mRNA_6690 0.65 +0.8
1,452,909 - 15058 mRNA_6690 0.65 +0.7
1,452,910 - 15058 mRNA_6690 0.65 +0.4
1,452,911 - 15058 mRNA_6690 0.65 +1.0
1,452,913 - 15058 mRNA_6690 0.65 -0.9
1,452,913 + 15058 mRNA_6690 0.65 -0.6
1,452,915 + 15058 mRNA_6690 0.65 -0.1
1,452,915 - 15058 mRNA_6690 0.65 +0.2
1,452,917 + 15058 mRNA_6690 0.65 +0.5
1,452,918 + 15058 mRNA_6690 0.65 +1.5
1,452,922 + 15058 mRNA_6690 0.65 -0.1
1,452,926 - 15058 mRNA_6690 0.65 +0.4
1,452,926 + 15058 mRNA_6690 0.65 -0.1
1,452,926 + 15058 mRNA_6690 0.65 -0.3
1,452,927 + 15058 mRNA_6690 0.65 +0.0
1,452,931 - 15058 mRNA_6690 0.66 +1.1
1,452,933 + 15058 mRNA_6690 0.66 -0.2
1,452,934 + 15058 mRNA_6690 0.66 +0.2
1,452,934 + 15058 mRNA_6690 0.66 +0.5
1,452,988 + 15058 mRNA_6690 0.67 +2.0
1,452,996 - 15058 mRNA_6690 0.67 +1.3
1,452,997 - 15058 mRNA_6690 0.67 +1.3
1,452,998 - 15058 mRNA_6690 0.67 -0.2
1,452,998 - 15058 mRNA_6690 0.67 +0.4
1,452,999 + 15058 mRNA_6690 0.67 +0.1
1,452,999 + 15058 mRNA_6690 0.67 +0.3
1,453,001 - 15058 mRNA_6690 0.67 -0.1
1,453,004 - 15058 mRNA_6690 0.67 +0.2
1,453,009 + 15058 mRNA_6690 0.67 -1.1
1,453,014 + 15058 mRNA_6690 0.68 +0.3
1,453,023 + 15058 mRNA_6690 0.68 -0.4
1,453,025 + 15058 mRNA_6690 0.68 +0.8
1,453,026 - 15058 mRNA_6690 0.68 -0.0
1,453,026 - 15058 mRNA_6690 0.68 +1.2
1,453,040 - 15058 mRNA_6690 0.68 -0.5
1,453,050 - 15058 mRNA_6690 0.69 +1.1
1,453,059 - 15058 mRNA_6690 0.69 -0.3
1,453,087 - 15058 mRNA_6690 0.69 +0.5
1,453,142 - 15058 mRNA_6690 0.71 +1.5
1,453,171 - 15058 mRNA_6690 0.72 +0.9
1,453,184 - 15058 mRNA_6690 0.72 +0.8
1,453,187 + 15058 mRNA_6690 0.72 +0.2
1,453,187 + 15058 mRNA_6690 0.72 -0.0
1,453,188 + 15058 mRNA_6690 0.72 +0.1
1,453,190 - 15058 mRNA_6690 0.72 +1.2
1,453,191 - 15058 mRNA_6690 0.72 +0.2
1,453,200 - 15058 mRNA_6690 0.72 +0.8
1,453,200 + 15058 mRNA_6690 0.72 -0.6
1,453,201 - 15058 mRNA_6690 0.72 -0.3
1,453,207 - 15058 mRNA_6690 0.72 +0.0
1,453,208 - 15058 mRNA_6690 0.73 -0.3
1,453,214 - 15058 mRNA_6690 0.73 +0.8
1,453,223 + 15058 mRNA_6690 0.73 +1.4
1,453,228 - 15058 mRNA_6690 0.73 +0.3
1,453,230 - 15058 mRNA_6690 0.73 -0.5
1,453,230 + 15058 mRNA_6690 0.73 +0.1
1,453,236 + 15058 mRNA_6690 0.73 -0.3
1,453,239 + 15058 mRNA_6690 0.73 +0.6
1,453,255 + 15058 mRNA_6690 0.74 +0.9
1,453,292 + 15058 mRNA_6690 0.75 +1.2
1,453,299 + 15058 mRNA_6690 0.75 +1.3
1,453,445 - 15058 mRNA_6690 0.78 +0.9
1,453,465 - 15058 mRNA_6690 0.79 +0.0
1,453,483 + 15058 mRNA_6690 0.79 -1.4
1,453,491 + 15058 mRNA_6690 0.80 +0.5
1,453,503 + 15058 mRNA_6690 0.80 +1.8
1,453,649 + 15058 mRNA_6690 0.84 +1.4
1,453,678 + 15058 mRNA_6690 0.84 +0.8
1,454,081 - +0.4
1,454,184 + +0.2
1,454,807 - -0.2
1,454,933 + +1.5
1,455,147 + 15059 mRNA_6691 0.20 +0.6
1,455,157 - 15059 mRNA_6691 0.21 +0.1

Or see this region's nucleotide sequence