Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6710

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15078 and 15079 are separated by 550 nucleotides mRNA_6710: 15078 - SUPERFAMILY--SSF50685, at 1,510,573 to 1,512,987 15078 mRNA_6711: 15079 - Hypothetical Protein, at 1,513,538 to 1,514,008 15079

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,509,577 + -0.1
1,509,612 + +1.0
1,509,932 + -0.4
1,509,950 - -0.4
1,509,983 + +0.4
1,510,130 - -1.0
1,510,149 - +0.8
1,510,150 + -0.3
1,510,151 + +0.1
1,510,154 - +0.3
1,510,157 - -0.0
1,510,158 - +2.0
1,510,311 + +0.6
1,510,323 - +0.0
1,510,346 - +0.4
1,510,468 + +0.4
1,510,698 + +0.0
1,510,874 - 15078 mRNA_6710 0.12 +0.3
1,511,016 - 15078 mRNA_6710 0.18 +0.1
1,511,020 + 15078 mRNA_6710 0.19 +0.1
1,511,394 + 15078 mRNA_6710 0.34 +0.4
1,511,499 - 15078 mRNA_6710 0.38 -0.0
1,512,030 + 15078 mRNA_6710 0.60 -0.4
1,512,330 - 15078 mRNA_6710 0.73 +0.6
1,512,372 - 15078 mRNA_6710 0.74 +0.3
1,512,993 - +0.4
1,513,266 + +0.7
1,513,285 - +0.2
1,513,396 + +1.7
1,513,451 - +0.4
1,513,454 + +0.6
1,513,455 + -0.3
1,513,557 + -0.4
1,513,567 - -0.1
1,513,723 + 15079 mRNA_6711 0.39 -0.3
1,513,745 - 15079 mRNA_6711 0.44 +0.0
1,513,768 + 15079 mRNA_6711 0.49 +0.3
1,513,895 - 15079 mRNA_6711 0.76 +0.6

Or see this region's nucleotide sequence