Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6730

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15097 and 15098 are separated by 589 nucleotides mRNA_6729: 15097 - HMMPfam-Putative GTPase activating protein for Arf-PF01412,PRINTS-HIV Rev interacting protein signature-PR00405,ProSiteProfiles-ARF GTPase-activating proteins domain profile.-PS50115,SMART-Putative GTP-ase activating proteins for the small GTPase, ARF-SM00105,SUPERFAMILY--SSF57863, at 8,871 to 11,490 15097 mRNA_6730: 15098 - K00326 E1.6.2.2 cytochrome-b5 reductase, at 12,080 to 14,125 15098

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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11,139 - 15097 mRNA_6729 0.87 +0.6
11,157 + 15097 mRNA_6729 0.87 +0.4
11,328 + +1.6
11,378 + -0.6
11,390 - +1.1
11,574 - +0.5
11,608 - +0.0
11,712 - +0.8
11,716 + +0.4
11,855 - +1.0
11,903 - +0.8
11,990 - +0.4
11,994 - -0.0
12,015 - +1.6
12,123 + +0.3
12,165 - -1.6
12,185 + +1.6
12,201 + +0.4
12,314 - 15098 mRNA_6730 0.11 -1.0
12,315 + 15098 mRNA_6730 0.11 -0.2
12,327 - 15098 mRNA_6730 0.12 +1.3
12,329 - 15098 mRNA_6730 0.12 +1.6
12,332 + 15098 mRNA_6730 0.12 +0.6
12,633 + 15098 mRNA_6730 0.27 +0.2
12,666 - 15098 mRNA_6730 0.29 +0.0
12,742 - 15098 mRNA_6730 0.32 -0.7
13,030 - 15098 mRNA_6730 0.46 -0.0
13,145 + 15098 mRNA_6730 0.52 -0.2
13,356 + 15098 mRNA_6730 0.62 +0.1
13,471 - 15098 mRNA_6730 0.68 +0.6
13,568 + 15098 mRNA_6730 0.73 +0.1
13,599 - 15098 mRNA_6730 0.74 -0.3
13,639 - 15098 mRNA_6730 0.76 -1.8
13,645 - 15098 mRNA_6730 0.76 +1.5
13,649 - 15098 mRNA_6730 0.77 +0.3
13,730 + 15098 mRNA_6730 0.81 +0.2
13,862 - 15098 mRNA_6730 0.87 +1.4
13,862 + 15098 mRNA_6730 0.87 -0.6
13,870 - 15098 mRNA_6730 0.87 -0.2
14,162 + -0.1
14,165 - -0.3
14,174 - +1.8
14,196 - +1.2
14,264 + -0.7
14,311 + -0.5
14,314 - -0.1
14,317 - +0.3
14,365 - +0.3
14,449 + -0.3
14,463 - -1.2
14,497 - +0.5
14,606 - +0.6
14,606 + +1.3
14,788 - +0.9
14,802 + +0.9
14,898 - +0.3
14,918 - -0.5
15,094 + +0.4
15,118 - +1.9

Or see this region's nucleotide sequence