Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6732

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15099 and 15100 are separated by 503 nucleotides mRNA_6731: 15099 - BLAST putative Ran-binding protein [Rhizoctonia solani 123E], at 15,699 to 18,601 15099 mRNA_6732: 15100 - KOG1530 Rhodanese-related sulfurtransferase, at 19,105 to 19,903 15100

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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18,184 + 15099 mRNA_6731 0.86 +0.9
18,552 - +1.8
18,970 - +0.5
19,961 - +0.6
19,984 + +0.2
19,992 + -0.7
20,004 - +0.9
20,137 - -0.9
20,171 + +0.5
20,288 + +0.2
20,457 - -0.6
20,539 + +2.1
20,571 + -0.5
20,585 - +0.5
20,586 + +1.7
20,597 - +1.2
20,604 + -1.1
20,604 + +0.5
20,632 + -1.1
20,723 - +0.6
20,735 - +1.1
20,766 + +0.0
20,777 - +0.7
20,786 + -0.3

Or see this region's nucleotide sequence