Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6743

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15110 and 15111 are separated by 94 nucleotides15111 and 15112 are separated by 127 nucleotides mRNA_6742: 15110 - Hypothetical Protein, at 41,325 to 41,801 15110 mRNA_6743: 15111 - K06671 STAG1_2, SCC3, IRR1 cohesin complex subunit SA-1/2, at 41,896 to 46,673 15111 mRNA_6744: 15112 - KOG0813 Glyoxylase, at 46,801 to 48,312 15112

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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40,909 + +1.5
40,911 - -0.9
40,923 - +0.2
43,833 - 15111 mRNA_6743 0.41 -0.2
46,087 - 15111 mRNA_6743 0.88 +0.0
46,122 - 15111 mRNA_6743 0.88 -0.5
46,230 - -0.1
46,423 + -0.4
46,626 - +0.8
46,636 + -1.1
46,656 - +0.4
46,684 + -0.2
46,803 + +1.1
46,901 + +0.8
47,134 + 15112 mRNA_6744 0.22 +0.1
47,248 + 15112 mRNA_6744 0.30 -0.3

Or see this region's nucleotide sequence