Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6769

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15136 and 15137 are separated by 310 nucleotides15137 and 15138 are separated by 258 nucleotides mRNA_6768: 15136 - HMMPfam-DNA repair protein endonuclease SAE2/CtIP C-terminus-PF08573, at 90,313 to 94,205 15136 mRNA_6769: 15137 - K01953 asnB, ASNS asparagine synthase (glutamine-hydrolysing), at 94,516 to 96,583 15137 mRNA_6770: 15138 - K03350 APC3, CDC27 anaphase-promoting complex subunit 3, at 96,842 to 100,028 15138

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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93,664 - 15136 mRNA_6768 0.86 +0.7
94,112 + -1.2
94,199 + +1.5
94,203 - +1.2
94,211 + +1.0
94,526 - +0.6
94,992 + 15137 mRNA_6769 0.23 +1.6
96,701 - -0.5
96,702 - +1.5
96,702 + +1.4
96,713 - +0.9
96,761 - +2.2
96,763 + +1.3
96,780 - -2.2
96,784 + -0.2
96,815 - +0.4
96,815 + +0.4
97,362 - 15138 mRNA_6770 0.16 +0.6

Or see this region's nucleotide sequence