Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6832

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15198 and 15199 are separated by 308 nucleotides15199 and 15200 are separated by 178 nucleotides15200 and 15201 are separated by 146 nucleotides mRNA_6830: 15198 - K07893 RAB6A Ras-related protein Rab-6A, at 227,427 to 228,724 15198 mRNA_6831: 15199 - HMMPfam-ATP synthase regulation protein NCA2-PF08637, at 229,033 to 229,533 15199 mRNA_6832: 15200 - K18158 NCA2 nuclear control of ATPase protein 2, at 229,712 to 231,545 15200 mRNA_6833: 15201 - HMMPfam-Outer mitochondrial membrane transport complex protein-PF10568,HMMPfam-Tom37 C-terminal domain-PF11801, at 231,692 to 232,700 15201

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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228,847 + +1.1
228,872 + -0.3
228,894 - +1.2
228,981 + +2.0
229,147 - 15199 mRNA_6831 0.23 +0.9
229,149 + 15199 mRNA_6831 0.23 +1.2
229,150 - 15199 mRNA_6831 0.23 +0.9
229,457 - 15199 mRNA_6831 0.85 +0.9
229,467 + 15199 mRNA_6831 0.87 +0.1
229,467 + 15199 mRNA_6831 0.87 -1.0
229,545 - +0.8
229,568 + +0.6
229,593 - +0.3
230,039 - 15200 mRNA_6832 0.18 +0.3
230,325 + 15200 mRNA_6832 0.33 +1.4
230,457 + 15200 mRNA_6832 0.41 +0.5
230,895 - 15200 mRNA_6832 0.65 +0.2
231,024 - 15200 mRNA_6832 0.72 +1.1
231,058 - 15200 mRNA_6832 0.73 +0.5
231,192 - 15200 mRNA_6832 0.81 -0.3
231,238 + 15200 mRNA_6832 0.83 +0.7
231,350 + 15200 mRNA_6832 0.89 +0.4
231,471 + +0.9
231,471 - +0.2
231,499 - +1.3
231,515 + +0.1
231,622 - +0.2
231,632 + +0.9
231,659 + +0.0
231,674 + +0.8
231,775 - +0.4
231,783 - -0.1
231,792 + -0.3
231,795 + 15201 mRNA_6833 0.10 -0.6
231,815 - 15201 mRNA_6833 0.12 +0.1
231,815 + 15201 mRNA_6833 0.12 +0.2
231,930 - 15201 mRNA_6833 0.24 -0.8
231,931 - 15201 mRNA_6833 0.24 +0.0
231,937 - 15201 mRNA_6833 0.24 +0.6
231,955 + 15201 mRNA_6833 0.26 +0.0
231,962 - 15201 mRNA_6833 0.27 -0.2
232,047 + 15201 mRNA_6833 0.35 +1.1
232,513 + 15201 mRNA_6833 0.81 +0.9

Or see this region's nucleotide sequence