Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6855

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15222 and 15223 are separated by 332 nucleotides15223 and 15224 are separated by 288 nucleotides mRNA_6854: 15222 - K16219 NTMT1, METTL11A, NTM1 protein N-terminal methyltransferase, at 280,873 to 281,900 15222 mRNA_6855: 15223 - KOG1601 GATA-4/5/6 transcription factors, at 282,233 to 283,773 15223 mRNA_6856: 15224 - K10395 KIF4_21_27 kinesin family member 4/21/27, at 284,062 to 291,229 15224

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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281,238 + 15222 mRNA_6854 0.36 +1.1
281,254 - 15222 mRNA_6854 0.37 +0.2
281,300 - 15222 mRNA_6854 0.42 +0.0
281,341 + 15222 mRNA_6854 0.46 +1.5
281,483 + 15222 mRNA_6854 0.59 +1.5
281,527 - 15222 mRNA_6854 0.64 -0.6
281,687 + 15222 mRNA_6854 0.79 +0.1
281,779 - 15222 mRNA_6854 0.88 -0.1
281,797 + 15222 mRNA_6854 0.90 +1.5
281,933 + +0.5
281,941 + -1.2
282,192 - +0.2
282,338 + +2.9
282,372 - -0.9
282,378 + -0.5
282,390 + 15223 mRNA_6855 0.10 +0.3
282,939 - 15223 mRNA_6855 0.46 +0.2
282,977 - 15223 mRNA_6855 0.48 +0.2
283,072 + 15223 mRNA_6855 0.54 -0.9
283,225 - 15223 mRNA_6855 0.64 +0.2
283,306 + 15223 mRNA_6855 0.70 +0.9
283,374 + 15223 mRNA_6855 0.74 -0.4
283,528 - 15223 mRNA_6855 0.84 +0.8
283,671 - +0.5
283,675 + -0.1
283,681 - +0.5
283,682 - +0.6
283,684 - +1.2
283,687 - +0.5
283,703 + +1.4
283,710 - +0.4
283,718 + +0.3
283,834 + +0.5
283,985 + +0.3
283,989 - +0.8
283,991 - +0.0
283,991 + -0.4
284,019 - +0.2
284,134 - +0.1
284,136 - -0.0
284,286 - -0.2
284,468 - +2.0
284,652 + +0.4

Or see this region's nucleotide sequence