Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6856

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15223 and 15224 are separated by 288 nucleotides mRNA_6855: 15223 - KOG1601 GATA-4/5/6 transcription factors, at 282,233 to 283,773 15223 mRNA_6856: 15224 - K10395 KIF4_21_27 kinesin family member 4/21/27, at 284,062 to 291,229 15224

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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283,072 + 15223 mRNA_6855 0.54 -0.9
283,225 - 15223 mRNA_6855 0.64 +0.2
283,306 + 15223 mRNA_6855 0.70 +0.9
283,374 + 15223 mRNA_6855 0.74 -0.4
283,528 - 15223 mRNA_6855 0.84 +0.8
283,671 - +0.5
283,675 + -0.1
283,681 - +0.5
283,682 - +0.6
283,684 - +1.2
283,687 - +0.5
283,703 + +1.4
283,710 - +0.4
283,718 + +0.3
283,834 + +0.5
283,985 + +0.3
283,989 - +0.8
283,991 - +0.0
283,991 + -0.4
284,019 - +0.2
284,134 - +0.1
284,136 - -0.0
284,286 - -0.2
284,468 - +2.0
284,652 + +0.4
284,858 - 15224 mRNA_6856 0.11 +0.6
284,911 + 15224 mRNA_6856 0.12 +0.5
285,014 + 15224 mRNA_6856 0.13 +0.4
285,319 - 15224 mRNA_6856 0.18 +0.3
285,337 - 15224 mRNA_6856 0.18 +0.6
285,396 + 15224 mRNA_6856 0.19 +1.8
285,603 - 15224 mRNA_6856 0.21 +1.2
285,605 + 15224 mRNA_6856 0.22 -0.2
285,861 - 15224 mRNA_6856 0.25 +1.0
286,103 + 15224 mRNA_6856 0.28 +0.8
286,218 + 15224 mRNA_6856 0.30 +0.4
286,221 + 15224 mRNA_6856 0.30 +0.4
286,246 + 15224 mRNA_6856 0.30 -1.4
286,372 - 15224 mRNA_6856 0.32 +0.3
286,373 + 15224 mRNA_6856 0.32 +0.9
286,565 + 15224 mRNA_6856 0.35 -0.1
286,578 - 15224 mRNA_6856 0.35 -0.1
286,637 - 15224 mRNA_6856 0.36 -1.2
286,715 + 15224 mRNA_6856 0.37 -0.1
286,721 + 15224 mRNA_6856 0.37 +0.5
286,773 + 15224 mRNA_6856 0.38 +1.2
286,795 - 15224 mRNA_6856 0.38 +1.6
286,972 + 15224 mRNA_6856 0.41 +0.7
287,068 + 15224 mRNA_6856 0.42 +0.4
287,125 - 15224 mRNA_6856 0.43 +0.7
287,133 + 15224 mRNA_6856 0.43 +0.7
287,144 - 15224 mRNA_6856 0.43 -1.0
287,584 - 15224 mRNA_6856 0.49 +0.5
287,615 + 15224 mRNA_6856 0.50 -0.3
287,619 + 15224 mRNA_6856 0.50 +0.4
287,860 + 15224 mRNA_6856 0.53 +0.4
287,924 - 15224 mRNA_6856 0.54 +0.5
288,249 - 15224 mRNA_6856 0.58 +0.8
288,326 - 15224 mRNA_6856 0.59 +1.5
288,401 + 15224 mRNA_6856 0.61 -1.4
288,416 - 15224 mRNA_6856 0.61 +0.9
288,688 + 15224 mRNA_6856 0.65 -0.8
288,693 + 15224 mRNA_6856 0.65 -0.1
288,797 + 15224 mRNA_6856 0.66 +1.4
289,385 - 15224 mRNA_6856 0.74 +0.0
289,601 + 15224 mRNA_6856 0.77 +1.4
289,864 + 15224 mRNA_6856 0.81 +0.9
290,024 - 15224 mRNA_6856 0.83 -0.2
290,215 - 15224 mRNA_6856 0.86 +0.2
290,323 - 15224 mRNA_6856 0.87 +0.1
290,330 + 15224 mRNA_6856 0.87 +1.6
290,424 - 15224 mRNA_6856 0.89 +1.6
290,470 + 15224 mRNA_6856 0.89 -0.1
290,667 - +0.9
290,778 + -0.8
290,887 + +0.2
290,909 + +0.4
290,930 + -1.0
290,941 + +0.0
291,056 + -1.1
291,056 - +0.3
291,219 - -1.3
291,225 - -0.2
291,321 - -0.2
291,324 - +0.2
291,325 - -0.2
291,662 + +1.1
291,838 + +0.0
291,975 + +0.7
292,093 + +0.4
292,120 + -0.3

Or see this region's nucleotide sequence