Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6869

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15236 and 15237 are separated by 682 nucleotides15237 and 15238 are separated by 47 nucleotides mRNA_6868: 15236 - Hypothetical Protein, at 312,999 to 313,640 15236 mRNA_6869: 15237 - K06125 COQ2 4-hydroxybenzoate polyprenyltransferase, at 314,323 to 315,416 15237 mRNA_6870: 15238 - K08736 MSH3 DNA mismatch repair protein MSH3, at 315,464 to 319,765 15238

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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313,441 + 15236 mRNA_6868 0.69 +0.7
313,458 - 15236 mRNA_6868 0.71 +0.1
313,466 + 15236 mRNA_6868 0.73 +0.5
313,563 + 15236 mRNA_6868 0.88 +0.5
313,585 + -1.2
313,702 + +0.0
313,705 - -0.7
313,706 - +2.4
313,710 - +0.4
313,710 + +1.0
313,712 + -0.4
313,731 + +1.8
313,741 + -0.5
313,908 + +0.8
313,985 - +0.9
314,020 + +0.9
315,468 - +0.6
315,627 + +0.1
315,750 + +0.4
315,810 + +0.3
315,919 + 15238 mRNA_6870 0.11 +0.9
316,067 - 15238 mRNA_6870 0.14 +0.6
316,253 + 15238 mRNA_6870 0.18 +1.9

Or see this region's nucleotide sequence