Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6892

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15259 and 15260 are separated by 535 nucleotides15260 and 15261 are separated by 325 nucleotides mRNA_6891: 15259 - KOG2104 Nuclear transport factor 2, at 369,617 to 370,677 15259 mRNA_6892: 15260 - Hypothetical Protein, at 371,213 to 372,518 15260 mRNA_6893: 15261 - Hypothetical Protein, at 372,844 to 373,603 15261

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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370,859 - +0.2
371,145 - -1.5
371,846 + 15260 mRNA_6892 0.48 +0.5
372,315 - 15260 mRNA_6892 0.84 -0.7
372,440 + +0.4
372,626 - +0.1
372,650 - -0.5
372,746 - -1.1
372,889 + -0.0
373,046 - 15261 mRNA_6893 0.27 +1.8
373,243 + 15261 mRNA_6893 0.53 -0.5
373,383 + 15261 mRNA_6893 0.71 +0.6

Or see this region's nucleotide sequence