Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6921

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15289 and 15290 are separated by 120 nucleotides mRNA_6921: 15289 - Hypothetical Protein, at 435,209 to 436,044 15289 mRNA_6922: 15290 - KOG4121 Nuclear pore complex, Nup133 component (sc Nup133), at 436,165 to 438,557 15290

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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434,540 + +0.7
434,545 + +0.4
434,821 - +1.2
434,837 - +1.3
434,838 + +0.2
434,868 - +1.6
434,875 - +0.6
434,875 + +0.7
435,088 + +0.3
435,142 - -0.3
435,152 + +0.4
435,277 + -0.4
435,296 + 15289 mRNA_6921 0.10 +0.1
435,316 - 15289 mRNA_6921 0.13 +0.5
435,333 - 15289 mRNA_6921 0.15 +0.4
435,370 - 15289 mRNA_6921 0.19 +0.0
435,527 + 15289 mRNA_6921 0.38 -0.3
435,567 - 15289 mRNA_6921 0.43 -0.6
435,568 - 15289 mRNA_6921 0.43 -0.4
435,733 + 15289 mRNA_6921 0.63 +0.9
435,756 + 15289 mRNA_6921 0.65 +1.2
435,847 + 15289 mRNA_6921 0.76 +0.5
435,853 + 15289 mRNA_6921 0.77 +0.0
435,876 + 15289 mRNA_6921 0.80 +0.0
435,884 - 15289 mRNA_6921 0.81 +0.1
435,886 + 15289 mRNA_6921 0.81 -0.3
435,953 - 15289 mRNA_6921 0.89 +0.6
435,997 + +0.0
436,033 + +0.7
436,041 - -2.5
436,041 + +0.8
436,069 + +0.7
436,072 - -0.3
436,091 - +0.6
436,094 + +1.0
436,114 + +0.1
436,180 + +0.2
436,320 - -0.1
436,472 + 15290 mRNA_6922 0.13 +0.7

Or see this region's nucleotide sequence