Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6929

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_6929: 15297 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 457,945 to 459,975 15297

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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456,966 - +1.0
457,097 - +0.0
457,098 + +0.1
457,101 - -1.0
457,114 + +0.7
457,232 - -1.7
457,235 - -0.5
457,248 - -0.2
457,249 + +0.7
457,261 + +0.1
457,270 + +0.7
457,345 - +0.2
457,358 + -0.1
457,358 + +2.3
457,363 - +0.4
457,371 + +0.7
457,372 - +0.0
457,373 + +0.0
457,374 - +0.1
457,391 + +0.6
457,394 + -0.3
457,395 + +0.9
457,398 + +0.1
457,407 - -0.3
457,409 - +0.3
457,424 - +0.2
457,431 + +1.5
457,433 - -0.0
457,434 + -0.8
457,436 - +0.5
457,439 - +0.0
457,440 + -0.1
457,441 + +0.7
457,441 - +0.6
457,441 + -0.0
457,441 + -0.7
457,443 + +1.0
457,451 - +0.9
457,464 - +1.9
457,467 + -0.5
457,525 - +1.1
457,575 + +1.2
457,577 - -0.3
457,703 - +0.7
457,724 - +0.1
457,731 + -0.3
457,733 - +0.2
457,733 - +0.2
457,734 + +0.1
457,744 - -1.3
457,751 + -0.0
458,170 - 15297 mRNA_6929 0.11 +0.9
458,183 + 15297 mRNA_6929 0.12 +1.9
458,506 - 15297 mRNA_6929 0.28 +0.4
458,661 + 15297 mRNA_6929 0.35 +0.3
459,028 + 15297 mRNA_6929 0.53 +0.5
459,139 - 15297 mRNA_6929 0.59 -0.0
459,657 + 15297 mRNA_6929 0.84 +0.3
459,792 - +0.2
459,801 + +0.6
459,860 - +2.1
460,068 + +0.8
460,070 - +1.1
460,110 - +0.6
460,112 + -0.2
460,259 - -1.4
460,440 + +0.0
460,481 + +0.5
460,541 + +0.2
460,558 + -0.4
460,662 - +1.1

Or see this region's nucleotide sequence