Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6930

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15298 and 15299 are separated by 508 nucleotides mRNA_6930: 15298 - Hypothetical Protein, at 461,530 to 462,565 15298 mRNA_6931: 15299 - KOG4844 Mitochondrial ribosomal protein S27, at 463,074 to 463,703 15299

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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460,541 + +0.2
460,558 + -0.4
460,662 - +1.1
460,990 + +0.9
461,006 + +0.5
461,204 + +0.8
461,228 + +0.5
461,243 - +1.3
461,377 - +1.1
461,383 - +0.3
461,397 + -0.5
461,404 + +1.5
461,421 - +0.5
461,462 + -0.1
461,464 + +0.4
461,479 - +0.5
461,486 + +0.8
461,508 - +0.6
461,509 + +1.0
461,513 + -0.1
461,514 - +0.2
461,520 - +1.9
461,521 - +2.3
461,522 - +1.5
461,524 + +1.9
461,533 - +0.3
461,543 + +0.3
461,544 + +0.5
461,557 + -0.5
461,561 - +1.4
461,564 + +1.1
461,579 - +0.8
461,683 - 15298 mRNA_6930 0.15 +0.3
461,711 + 15298 mRNA_6930 0.17 +0.6
461,720 - 15298 mRNA_6930 0.18 -0.5
461,727 + 15298 mRNA_6930 0.19 -0.1
461,727 + 15298 mRNA_6930 0.19 +0.1
461,858 + 15298 mRNA_6930 0.32 +2.0
461,861 + 15298 mRNA_6930 0.32 +0.9
461,869 + 15298 mRNA_6930 0.33 +0.4
462,170 + 15298 mRNA_6930 0.62 +0.2
462,200 - 15298 mRNA_6930 0.65 +1.1
462,271 - 15298 mRNA_6930 0.72 -0.0
462,323 - 15298 mRNA_6930 0.77 -0.9
462,327 + 15298 mRNA_6930 0.77 +0.2
462,353 + 15298 mRNA_6930 0.79 +1.0
462,608 - +1.5
462,609 + +0.4
462,609 - +2.4
462,611 + +0.5
462,646 + +1.2
462,718 - +1.0
462,779 + -0.2
462,881 - +0.7
462,900 - +1.6

Or see this region's nucleotide sequence