Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6952

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15319 and 15320 are separated by 280 nucleotides15320 and 15321 are separated by 128 nucleotides mRNA_6951: 15319 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 510,991 to 511,843 15319 mRNA_6952: 15320 - K11858 USP48 ubiquitin carboxyl-terminal hydrolase 48, at 512,124 to 517,290 15320 mRNA_6953: 15321 - K13719 OTU1, YOD1 ubiquitin thioesterase OTU1, at 517,419 to 518,782 15321

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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511,382 + 15319 mRNA_6951 0.46 -0.2
511,393 + 15319 mRNA_6951 0.47 +1.1
512,292 - +1.2
512,302 + +1.6
512,844 + 15320 mRNA_6952 0.14 -0.1
512,993 - 15320 mRNA_6952 0.17 +0.3
513,136 - 15320 mRNA_6952 0.20 -0.4
513,621 - 15320 mRNA_6952 0.29 +0.6
514,193 + 15320 mRNA_6952 0.40 +0.0
514,601 - 15320 mRNA_6952 0.48 +0.7
514,928 + 15320 mRNA_6952 0.54 +0.9
515,166 + 15320 mRNA_6952 0.59 -0.6
515,206 + 15320 mRNA_6952 0.60 +0.7
515,770 + 15320 mRNA_6952 0.71 +0.0
516,203 - 15320 mRNA_6952 0.79 +0.4
516,762 + 15320 mRNA_6952 0.90 +0.6
516,765 + 15320 mRNA_6952 0.90 +1.7
516,769 + 15320 mRNA_6952 0.90 +0.4
516,906 + +0.6
517,043 - +0.7
517,054 - -0.4
517,182 - +0.2
517,216 - +0.3
517,302 - -0.2
517,321 - +0.1
517,502 + +0.4
517,690 - 15321 mRNA_6953 0.20 +1.0
517,965 + 15321 mRNA_6953 0.40 +0.4
517,995 + 15321 mRNA_6953 0.42 -0.1

Or see this region's nucleotide sequence