Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6958

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15326 and 15327 are separated by 309 nucleotides mRNA_6958: 15326 - K09238 ACE2 metallothionein expression activator, at 534,004 to 536,795 15326 mRNA_6959: 15327 - K14805 DDX24, MAK5 ATP-dependent RNA helicase DDX24/MAK5, at 537,105 to 540,222 15327

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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533,036 + +0.4
533,068 + +0.9
533,092 + -0.7
533,098 - -0.6
533,121 + +0.2
533,134 + +0.2
533,159 - +0.3
533,171 + -0.2
533,173 - +0.4
533,174 + -0.7
533,212 + +0.1
533,223 + +0.7
533,224 - +1.9
533,245 - +0.6
533,357 + +0.5
533,376 + +0.0
533,380 + +0.7
533,380 - +0.7
533,383 - +1.7
533,384 + +1.2
533,391 + +0.2
533,395 + +0.6
533,398 - +0.1
533,408 + +0.4
533,408 + +0.1
533,409 + +1.2
533,409 + +1.0
533,409 + +0.5
533,429 - -0.8
533,431 + +0.4
533,432 + +0.2
533,433 - -1.2
533,439 - -0.1
533,446 + +0.2
533,483 + +0.5
533,484 - +0.5
533,485 + -0.2
533,493 - +1.6
533,507 - +0.6
533,514 + -0.2
533,514 - -0.0
533,515 - -0.2
533,522 + +1.0
533,524 - -0.1
533,526 - +0.6
533,685 - -0.4
533,692 - +0.0
533,819 - -0.2
533,851 - +0.1
533,979 - +0.2
533,993 + +0.6
533,996 + -0.5
534,308 - 15326 mRNA_6958 0.11 +0.2
534,589 + 15326 mRNA_6958 0.21 -1.0
534,838 - 15326 mRNA_6958 0.30 -2.5
535,147 - 15326 mRNA_6958 0.41 -0.7
535,150 - 15326 mRNA_6958 0.41 +0.1
535,167 + 15326 mRNA_6958 0.42 +0.3
535,782 + 15326 mRNA_6958 0.64 +0.0
536,049 + 15326 mRNA_6958 0.73 +0.3
536,485 - 15326 mRNA_6958 0.89 -1.7
536,644 - +0.7

Or see this region's nucleotide sequence