Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6977

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15344 and 15345 are separated by 26 nucleotides15345 and 15346 are separated by 142 nucleotides mRNA_6976: 15344 - K14002 SCJ1 DnaJ-related protein SCJ1, at 582,618 to 583,763 15344 mRNA_6977: 15345 - K09515 DNAJB9 DnaJ homolog subfamily B member 9, at 583,790 to 584,346 15345 mRNA_6978: 15346 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 584,489 to 585,687 15346

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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582,932 + 15344 mRNA_6976 0.27 +0.9
582,952 + 15344 mRNA_6976 0.29 -0.6
583,366 + 15344 mRNA_6976 0.65 +0.8
583,375 + 15344 mRNA_6976 0.66 +1.0
583,496 + 15344 mRNA_6976 0.77 +0.3
584,005 + 15345 mRNA_6977 0.39 +0.2
584,135 - 15345 mRNA_6977 0.62 +0.3
584,245 + 15345 mRNA_6977 0.82 +0.1
584,388 - +0.8
584,391 - +0.1
584,392 - +0.1
584,395 - +0.3
584,399 - -0.4
584,401 - +0.3
584,406 - +0.0
584,407 + -0.4
584,411 - -0.1
584,431 + +1.2
584,441 - -0.4
584,447 - +0.2
584,448 + -0.0
584,696 - 15346 mRNA_6978 0.17 +0.9
584,721 + 15346 mRNA_6978 0.19 +0.7
584,724 - 15346 mRNA_6978 0.20 +1.0
584,756 - 15346 mRNA_6978 0.22 +1.9
584,858 - 15346 mRNA_6978 0.31 +0.1
584,896 + 15346 mRNA_6978 0.34 -0.1
585,158 + 15346 mRNA_6978 0.56 +0.9
585,163 + 15346 mRNA_6978 0.56 -0.2

Or see this region's nucleotide sequence