Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7021

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15389 and 15390 are separated by 282 nucleotides mRNA_7021: 15389 - K21027 TRMU, SLM3 tRNA-5-taurinomethyluridine 2-sulfurtransferase, at 692,794 to 694,459 15389 mRNA_7022: 15390 - KOG0758 Mitochondrial carnitine-acylcarnitine carrier protein, at 694,742 to 696,268 15390

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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691,794 + -0.1
691,796 - +0.8
691,796 - -1.1
691,939 + +0.0
691,940 - -0.8
692,072 - +1.6
692,081 + +1.0
692,084 - -0.0
692,232 - +1.2
692,248 + +0.2
692,393 - +1.8
692,395 + +0.4
692,395 + -0.0
692,527 + +0.2
692,528 + +0.0
692,553 - +0.0
692,661 + +1.5
692,678 - +0.8
692,680 + +0.1
692,683 + +0.9
692,827 - +0.1
692,845 - +0.0
692,856 - -0.3
692,991 - 15389 mRNA_7021 0.12 +0.6
693,111 + 15389 mRNA_7021 0.19 +0.6
693,117 - 15389 mRNA_7021 0.19 -1.0
693,137 + 15389 mRNA_7021 0.21 -0.6
693,137 + 15389 mRNA_7021 0.21 +0.5
693,146 + 15389 mRNA_7021 0.21 -0.1
693,164 + 15389 mRNA_7021 0.22 +0.2
693,404 - 15389 mRNA_7021 0.37 +1.0
693,709 + 15389 mRNA_7021 0.55 -0.4
693,709 - 15389 mRNA_7021 0.55 +0.0
694,769 + +1.4
694,890 - +0.1
695,063 - 15390 mRNA_7022 0.21 +0.2
695,163 + 15390 mRNA_7022 0.28 +0.9
695,180 - 15390 mRNA_7022 0.29 +0.1
695,194 + 15390 mRNA_7022 0.30 -1.0
695,323 + 15390 mRNA_7022 0.38 +0.3

Or see this region's nucleotide sequence