Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7030

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15397 and 15398 are separated by 559 nucleotides mRNA_7029: 15397 - Hypothetical Protein, at 708,796 to 709,745 15397 mRNA_7030: 15398 - SUPERFAMILY--SSF50685, at 710,305 to 711,678 15398

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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709,495 - 15397 mRNA_7029 0.74 +1.5
709,657 + +1.3
709,667 - +1.9
709,673 - +0.4
709,676 - +0.9
709,693 + +0.3
709,807 - -0.5
709,834 - -0.6
709,840 - -0.2
709,841 - +0.0
709,867 - -0.2
709,881 + +0.6
709,883 + +1.6
709,970 - +0.3
709,982 + +0.7
709,987 + +1.4
711,124 - 15398 mRNA_7030 0.60 +0.3
711,243 + 15398 mRNA_7030 0.68 +0.3
711,280 + 15398 mRNA_7030 0.71 +0.2
711,281 - 15398 mRNA_7030 0.71 +0.4
711,298 - 15398 mRNA_7030 0.72 +0.1
711,314 + 15398 mRNA_7030 0.73 +0.2
711,418 - 15398 mRNA_7030 0.81 +0.3
711,455 + 15398 mRNA_7030 0.84 +0.6
711,603 + -0.1
711,604 + +0.7
711,755 + +0.9
711,756 + -1.0
711,757 + +1.1
711,914 + +0.0
711,916 + +0.7
712,036 - +0.3
712,051 + +0.3

Or see this region's nucleotide sequence