Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7037

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15404 and 15405 are separated by 120 nucleotides15405 and 15406 are separated by 548 nucleotides mRNA_7036: 15404 - K00831 serC, PSAT1 phosphoserine aminotransferase, at 721,038 to 722,425 15404 mRNA_7037: 15405 - K08254 E3.2.1.59 glucan endo-1,3-alpha-glucosidase, at 722,546 to 724,803 15405 mRNA_7038: 15406 - K15458 SAP185_190 SIT4-associating protein SAP185/190, at 725,352 to 729,605 15406

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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722,452 - +0.1
722,564 - -0.7
722,723 - -0.0
722,882 - 15405 mRNA_7037 0.15 -0.5
723,074 - 15405 mRNA_7037 0.23 +0.0
723,620 - 15405 mRNA_7037 0.48 +1.8
724,045 - 15405 mRNA_7037 0.66 +0.1
724,155 - 15405 mRNA_7037 0.71 +0.3
724,514 - 15405 mRNA_7037 0.87 +0.6
724,780 + -0.3
724,793 - -0.1
725,147 + +0.1
725,267 - +1.0
725,286 - -0.0
725,427 + +0.3
725,516 - +0.4
725,803 - 15406 mRNA_7038 0.11 -1.0

Or see this region's nucleotide sequence