Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7053

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15420 and 15421 are separated by 286 nucleotides15421 and 15422 are separated by 233 nucleotides mRNA_7052: 15420 - K01624 FBA, fbaA fructose-bisphosphate aldolase, class II, at 764,515 to 766,298 15420 mRNA_7053: 15421 - K01192 E3.2.1.25, MANBA, manB beta-mannosidase, at 766,585 to 770,373 15421 mRNA_7054: 15422 - K14018 PLAA, DOA1, UFD3 phospholipase A-2-activating protein, at 770,607 to 773,938 15422

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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766,366 - -0.2
766,370 + +0.2
766,409 - -1.9
766,542 - +0.5
766,687 + -0.1
766,687 - -0.5
766,692 + -1.8
767,118 - 15421 mRNA_7053 0.14 +0.4
767,133 + 15421 mRNA_7053 0.14 -0.7
767,218 + 15421 mRNA_7053 0.17 -0.5
767,249 - 15421 mRNA_7053 0.18 +0.1
767,688 + 15421 mRNA_7053 0.29 +1.0
767,698 - 15421 mRNA_7053 0.29 +0.2
767,831 - 15421 mRNA_7053 0.33 +0.4
768,274 + 15421 mRNA_7053 0.45 +0.1
768,906 - 15421 mRNA_7053 0.61 +0.0
769,189 - 15421 mRNA_7053 0.69 -0.5
769,274 - 15421 mRNA_7053 0.71 +0.6
769,454 - 15421 mRNA_7053 0.76 -0.7
769,588 - 15421 mRNA_7053 0.79 -0.6
770,030 + +1.2
770,158 - +1.1
770,370 - +0.6

Or see this region's nucleotide sequence