Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7060

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15427 and 15428 are separated by 152 nucleotides15428 and 15429 are separated by 851 nucleotides mRNA_7059: 15427 - BLAST golgi apparatus membrane protein [Pochonia chlamy..., at 785,063 to 786,823 15427 mRNA_7060: 15428 - HMMPfam-Proteolipid membrane potential modulator-PF01679, at 786,976 to 788,620 15428 mRNA_7061: 15429 - K01077 E3.1.3.1, phoA, phoB alkaline phosphatase, at 789,472 to 792,234 15429

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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786,000 - 15427 mRNA_7059 0.53 +0.5
786,000 - 15427 mRNA_7059 0.53 +1.2
786,124 - 15427 mRNA_7059 0.60 +0.4
786,285 - 15427 mRNA_7059 0.69 +0.1
786,457 + 15427 mRNA_7059 0.79 +0.4
786,461 + 15427 mRNA_7059 0.79 -0.2
786,566 - 15427 mRNA_7059 0.85 -0.3
786,576 - 15427 mRNA_7059 0.86 +1.6
786,604 + 15427 mRNA_7059 0.88 -0.2
786,741 + +0.3
786,769 + +0.8
786,789 + +0.2
786,871 - -0.1
787,183 + 15428 mRNA_7060 0.13 +0.4
788,490 - -0.6
788,516 + +1.7
788,636 - +0.7
788,664 + +2.1
788,815 - +0.1
788,816 - -0.1
788,935 + +0.5
789,086 - -0.2
789,087 - -0.2
789,108 + +0.4

Or see this region's nucleotide sequence