Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7083

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15450 and 15451 are separated by 7 nucleotides15451 and 15452 are separated by 149 nucleotides mRNA_7082: 15450 - K20406 NPRL3 nitrogen permease regulator 3-like protein, at 838,009 to 840,569 15450 mRNA_7083: 15451 - K18803 HPM1 protein-histidine N-methyltransferase, at 840,577 to 841,991 15451 mRNA_7084: 15452 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 842,141 to 843,806 15452

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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840,067 - 15450 mRNA_7082 0.80 +1.0
840,193 - 15450 mRNA_7082 0.85 +1.3
841,411 + 15451 mRNA_7083 0.59 -0.4
841,713 - 15451 mRNA_7083 0.80 +1.4
841,733 + 15451 mRNA_7083 0.82 +1.8
842,012 - +0.7
842,022 - -0.4
842,027 + +0.3
842,029 + +0.3
842,180 - +0.3
842,189 + +1.3
842,280 - +1.0
842,406 - 15452 mRNA_7084 0.16 +2.9
842,440 - 15452 mRNA_7084 0.18 -1.2
842,764 + 15452 mRNA_7084 0.37 -0.1

Or see this region's nucleotide sequence