Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7107

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15474 and 15475 are separated by 214 nucleotides15475 and 15476 are separated by 136 nucleotides mRNA_7106: 15474 - K11313 SUPT3H, SPT3 transcription initiation protein SPT3, at 895,700 to 897,201 15474 mRNA_7107: 15475 - KOG2950 Uncharacterized protein involved in protein-protein interaction, contains polyproline-binding GYF domain, at 897,416 to 899,091 15475 mRNA_7108: 15476 - HMMPfam-Arrestin (or S-antigen), C-terminal domain-PF02752,SMART-Arrestin (or S-antigen), C-terminal domain-SM01017,SUPERFAMILY--SSF81296, at 899,228 to 903,559 15476

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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896,481 - 15474 mRNA_7106 0.52 +0.1
896,628 - 15474 mRNA_7106 0.62 -0.5
897,104 + -0.1
897,359 - +0.1
897,367 + +0.0
897,376 + +0.9
897,398 - -0.5
897,496 - +0.6
897,641 - 15475 mRNA_7107 0.13 +0.6
897,921 - 15475 mRNA_7107 0.30 -1.0
898,355 - 15475 mRNA_7107 0.56 +0.8
898,923 - 15475 mRNA_7107 0.90 -0.9
899,064 - -0.4
899,208 + +0.4
899,315 + +0.6
899,383 - +0.1
899,498 - +0.4
899,551 - -0.1
899,897 + 15476 mRNA_7108 0.15 +0.2
899,928 - 15476 mRNA_7108 0.16 +0.3

Or see this region's nucleotide sequence