Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7159

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15526 and 15527 are separated by 138 nucleotides15527 and 15528 are separated by 242 nucleotides mRNA_7158: 15526 - K09529 DNAJC9 DnaJ homolog subfamily C member 9, at 1,014,163 to 1,016,901 15526 mRNA_7159: 15527 - HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,017,040 to 1,019,381 15527 mRNA_7160: 15528 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1,019,624 to 1,022,322 15528

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,016,089 + 15526 mRNA_7158 0.70 +1.1
1,016,119 - 15526 mRNA_7158 0.71 -0.1
1,016,378 - 15526 mRNA_7158 0.81 +2.2
1,016,802 + -1.2
1,016,814 - -0.6
1,016,973 + +0.6
1,016,998 - +0.4
1,016,999 - -0.2
1,017,000 + +0.9
1,017,005 + +0.7
1,017,007 - +1.1
1,017,091 + -0.4
1,017,250 + -0.1
1,017,416 - 15527 mRNA_7159 0.16 -0.1
1,017,661 + 15527 mRNA_7159 0.27 +0.5
1,018,242 - 15527 mRNA_7159 0.51 +1.8
1,018,407 - 15527 mRNA_7159 0.58 +0.4
1,018,676 + 15527 mRNA_7159 0.70 +0.2
1,018,973 + 15527 mRNA_7159 0.83 +1.0
1,018,975 - 15527 mRNA_7159 0.83 -0.5
1,018,990 - 15527 mRNA_7159 0.83 +0.5
1,019,116 + 15527 mRNA_7159 0.89 -0.2
1,019,158 + -0.0
1,019,176 + -0.1
1,019,702 - +0.5
1,019,707 + +0.1
1,019,738 - +0.2
1,019,812 + -0.2
1,019,886 + +0.4
1,019,928 + 15528 mRNA_7160 0.11 +0.1
1,019,964 + 15528 mRNA_7160 0.13 +0.7
1,020,341 - 15528 mRNA_7160 0.27 +2.0

Or see this region's nucleotide sequence