Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7182

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15549 and 15550 are separated by 251 nucleotides mRNA_7181: 15549 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 1,064,763 to 1,065,253 15549 mRNA_7182: 15550 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1,065,505 to 1,067,037 15550

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,064,546 - +0.4
1,064,603 - -0.6
1,064,675 - +0.5
1,064,767 - +0.0
1,064,769 + +1.0
1,064,774 + +1.2
1,064,783 + +0.2
1,064,820 - 15549 mRNA_7181 0.12 +0.1
1,064,838 + 15549 mRNA_7181 0.15 +0.8
1,064,945 + 15549 mRNA_7181 0.37 +0.6
1,064,945 - 15549 mRNA_7181 0.37 +0.6
1,064,950 + 15549 mRNA_7181 0.38 +2.1
1,065,034 - 15549 mRNA_7181 0.55 -0.6
1,065,189 - 15549 mRNA_7181 0.87 +0.8
1,065,365 + +0.0
1,065,469 + +0.7
1,065,813 + 15550 mRNA_7182 0.20 +0.4
1,065,931 + 15550 mRNA_7182 0.28 -0.2
1,065,953 - 15550 mRNA_7182 0.29 -0.3
1,066,234 + 15550 mRNA_7182 0.48 +1.8
1,066,645 + 15550 mRNA_7182 0.74 +0.1
1,066,822 + 15550 mRNA_7182 0.86 +0.0
1,066,839 - 15550 mRNA_7182 0.87 -1.4
1,066,840 + 15550 mRNA_7182 0.87 +0.1
1,067,861 + -0.4
1,067,983 + +0.6
1,068,028 + +1.7

Or see this region's nucleotide sequence