Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7193

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15560 and 15561 are separated by 859 nucleotides15561 and 15562 are separated by 371 nucleotides mRNA_7192: 15560 - Hypothetical Protein, at 1,088,772 to 1,091,031 15560 mRNA_7193: 15561 - K03678 RRP45, EXOSC9 exosome complex component RRP45, at 1,091,891 to 1,093,190 15561 mRNA_7194: 15562 - K12831 SF3B4, SAP49 splicing factor 3B subunit 4, at 1,093,562 to 1,094,787 15562

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,091,097 - +0.1
1,091,116 - +0.3
1,091,146 - +1.6
1,091,147 - +0.9
1,091,149 + +1.8
1,091,164 - -0.8
1,091,304 + +0.2
1,091,436 - +0.6
1,091,445 - +1.7
1,091,446 + +0.4
1,091,463 - +0.6
1,091,483 + +0.0
1,091,486 + +2.5
1,091,499 - +0.5
1,091,504 - +1.4
1,091,504 - +0.3
1,091,511 - -0.5
1,091,511 + -0.2
1,091,558 + -0.4
1,091,648 + -0.0
1,091,650 - +0.1
1,091,733 - -0.2
1,091,736 - +0.7
1,091,747 + -0.5
1,091,779 + +0.2
1,091,792 - +2.5
1,091,804 - +1.6

Or see this region's nucleotide sequence