Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7221

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15589 and 15590 are separated by 349 nucleotides mRNA_7221: 15589 - K02133 ATPeF1B, ATP5B, ATP2 F-type H+-transporting ATPase subunit beta, at 1,163,041 to 1,165,362 15589 mRNA_7222: 15590 - KOG1572 Predicted protein tyrosine phosphatase, at 1,165,712 to 1,166,653 15590

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,162,388 - +0.2
1,162,543 + +0.8
1,162,890 - -0.3
1,162,969 - -0.1
1,162,969 - +0.4
1,162,969 + +0.5
1,162,976 + -0.3
1,162,984 + -0.5
1,162,989 - -1.1
1,162,996 - -0.7
1,162,999 - +0.3
1,162,999 + +0.5
1,163,003 + +0.1
1,163,009 - +2.0
1,163,016 + +0.4
1,165,385 - +0.3
1,165,522 - +0.8
1,165,572 - +0.6
1,165,692 + +1.1
1,165,708 - +0.4
1,165,825 - 15590 mRNA_7222 0.12 +0.4
1,165,860 + 15590 mRNA_7222 0.16 +0.0
1,166,001 + 15590 mRNA_7222 0.31 +0.3
1,166,087 - 15590 mRNA_7222 0.40 +0.4
1,166,259 - 15590 mRNA_7222 0.58 +0.9

Or see this region's nucleotide sequence