Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7226

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15593 and 15594 are separated by 582 nucleotides15594 and 15595 are separated by 235 nucleotides mRNA_7225: 15593 - Hypothetical Protein, at 1,174,359 to 1,174,926 15593 mRNA_7226: 15594 - HMMPfam-Demethylmenaquinone methyltransferase-PF03737,SUPERFAMILY--SSF89562, at 1,175,509 to 1,176,564 15594 mRNA_7227: 15595 - K03239 EIF2B1 translation initiation factor eIF-2B subunit alpha, at 1,176,800 to 1,178,543 15595

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,174,730 + 15593 mRNA_7225 0.65 -0.0
1,174,854 - 15593 mRNA_7225 0.87 +0.5
1,174,863 + 15593 mRNA_7225 0.89 +1.2
1,175,186 - -0.3
1,175,756 + 15594 mRNA_7226 0.23 +1.2
1,176,034 + 15594 mRNA_7226 0.50 +0.3
1,176,776 + -0.3
1,176,780 - +0.8
1,176,938 + +0.4
1,177,087 - 15595 mRNA_7227 0.16 +0.5
1,177,174 + 15595 mRNA_7227 0.21 +0.1
1,177,230 - 15595 mRNA_7227 0.25 +1.4
1,177,374 - 15595 mRNA_7227 0.33 +0.2

Or see this region's nucleotide sequence