Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7245

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15612 and 15613 are separated by 432 nucleotides15613 and 15614 are separated by 72 nucleotides mRNA_7244: 15612 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 1,209,765 to 1,211,262 15612 mRNA_7245: 15613 - K17972 NAA20, NAT3 N-terminal acetyltransferase B complex catalytic subunit, at 1,211,695 to 1,212,788 15613 mRNA_7246: 15614 - Hypothetical Protein, at 1,212,861 to 1,214,455 15614

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,210,857 - 15612 mRNA_7244 0.73 -0.4
1,211,181 + -0.2
1,211,481 + +0.1
1,211,573 + +0.9
1,211,580 - +0.6
1,211,592 + +0.8
1,211,592 + -0.2
1,211,618 - -1.2
1,212,729 + +0.4
1,212,752 - +0.9
1,213,135 - 15614 mRNA_7246 0.17 +1.3
1,213,309 - 15614 mRNA_7246 0.28 +0.9
1,213,661 - 15614 mRNA_7246 0.50 +0.7
1,213,768 - 15614 mRNA_7246 0.57 +0.5
1,213,770 + 15614 mRNA_7246 0.57 -0.1

Or see this region's nucleotide sequence