Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7254

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15621 and 15622 are separated by 303 nucleotides15622 and 15623 are separated by 53 nucleotides mRNA_7253: 15621 - KOG2497 Predicted methyltransferase, at 1,224,548 to 1,225,738 15621 mRNA_7254: 15622 - Hypothetical Protein, at 1,226,042 to 1,227,561 15622 mRNA_7255: 15623 - Hypothetical Protein, at 1,227,615 to 1,231,158 15623

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,225,069 + 15621 mRNA_7253 0.44 +1.6
1,225,374 + 15621 mRNA_7253 0.69 +0.2
1,225,379 - 15621 mRNA_7253 0.70 +0.8
1,225,383 + 15621 mRNA_7253 0.70 -0.3
1,225,677 + -0.5
1,225,760 + +0.4
1,225,834 + -0.3
1,225,841 + +0.2
1,225,883 + -0.7
1,225,913 - -0.6
1,225,932 - +1.0
1,226,078 + +0.3
1,226,111 - +0.2
1,226,112 - +0.5
1,226,250 + 15622 mRNA_7254 0.14 -0.1
1,226,350 + 15622 mRNA_7254 0.20 +0.4
1,226,382 - 15622 mRNA_7254 0.22 +0.0
1,226,388 + 15622 mRNA_7254 0.23 +0.7
1,226,388 + 15622 mRNA_7254 0.23 -0.2
1,226,396 + 15622 mRNA_7254 0.23 -0.2
1,226,491 - 15622 mRNA_7254 0.30 -0.2
1,226,634 - 15622 mRNA_7254 0.39 +0.2
1,226,711 + 15622 mRNA_7254 0.44 +0.1
1,226,737 + 15622 mRNA_7254 0.46 +0.1
1,226,974 + 15622 mRNA_7254 0.61 -0.1
1,227,028 - 15622 mRNA_7254 0.65 +0.8
1,227,122 + 15622 mRNA_7254 0.71 +1.6
1,227,214 + 15622 mRNA_7254 0.77 +1.0
1,227,393 - 15622 mRNA_7254 0.89 +1.0
1,227,524 - -0.2
1,227,541 + +0.7
1,227,561 + -0.0
1,227,566 - -0.5
1,227,698 - +1.5
1,227,699 - +0.5
1,227,701 - +1.4
1,227,709 - -0.0
1,227,709 - +0.1
1,227,710 - -0.2
1,227,715 + +1.0
1,227,715 + +1.2
1,227,718 + -1.5
1,227,814 - +1.1
1,227,844 - +2.1
1,227,854 - -0.0
1,228,043 + 15623 mRNA_7255 0.12 +0.5
1,228,044 - 15623 mRNA_7255 0.12 -0.3
1,228,044 - 15623 mRNA_7255 0.12 +0.7
1,228,048 - 15623 mRNA_7255 0.12 -0.8
1,228,048 + 15623 mRNA_7255 0.12 +0.0
1,228,054 + 15623 mRNA_7255 0.12 +0.5
1,228,167 + 15623 mRNA_7255 0.16 +0.7
1,228,551 - 15623 mRNA_7255 0.26 +0.2

Or see this region's nucleotide sequence