Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7276

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15643 and 15644 are separated by 85 nucleotides15644 and 15645 are separated by 272 nucleotides mRNA_7275: 15643 - HMMPfam-Uncharacterized conserved protein (DUF2346)-PF09803, at 1,277,965 to 1,278,426 15643 mRNA_7276: 15644 - K17806 PAM17, TIM23 mitochondrial import inner membrane translocase subunit TIM23, at 1,278,512 to 1,279,383 15644 mRNA_7277: 15645 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 1,279,656 to 1,282,236 15645

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,277,727 + -0.2
1,278,434 - -1.3
1,278,436 - -0.7
1,278,451 - +1.3
1,278,452 - +0.1
1,278,750 - 15644 mRNA_7276 0.27 -0.1
1,278,764 + 15644 mRNA_7276 0.29 +0.5
1,278,880 - 15644 mRNA_7276 0.42 +0.5
1,278,881 + 15644 mRNA_7276 0.42 +0.2
1,278,902 + 15644 mRNA_7276 0.45 +0.3
1,279,149 - 15644 mRNA_7276 0.73 +2.1
1,279,159 + 15644 mRNA_7276 0.74 +0.4
1,279,279 - 15644 mRNA_7276 0.88 -0.5
1,279,484 - +0.5
1,279,618 - +1.9
1,280,058 - 15645 mRNA_7277 0.16 +1.9

Or see this region's nucleotide sequence