Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7279

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15647 and 15648 are separated by 257 nucleotides mRNA_7279: 15647 - K13698 ABHD4 abhydrolase domain-containing protein 4, at 1,286,393 to 1,287,273 15647 mRNA_7280: 15648 - Hypothetical Protein, at 1,287,531 to 1,288,393 15648

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,285,448 - -0.6
1,285,487 - +1.7
1,285,503 - +0.2
1,285,523 - +0.7
1,285,573 - +0.3
1,285,656 - +0.5
1,285,763 - +2.1
1,285,765 + +0.1
1,285,803 - +0.2
1,286,102 - +0.5
1,286,105 - -1.2
1,286,112 - +0.2
1,286,112 + +0.0
1,286,155 - -0.1
1,286,165 + +0.5
1,286,213 + +0.7
1,286,232 - +1.3
1,286,372 - +0.7
1,286,393 - -0.5
1,286,444 - +0.8
1,286,547 + 15647 mRNA_7279 0.17 -0.2
1,286,727 + 15647 mRNA_7279 0.38 +0.0
1,286,844 + 15647 mRNA_7279 0.51 +1.7
1,287,009 + 15647 mRNA_7279 0.70 +1.1
1,287,168 - 15647 mRNA_7279 0.88 +1.7
1,287,176 + 15647 mRNA_7279 0.89 +0.3
1,287,194 + +1.4
1,287,329 + +0.4
1,287,331 - +0.9
1,287,445 - -0.3
1,287,474 + -0.1
1,287,615 + +0.1
1,287,619 - 15648 mRNA_7280 0.10 +0.2
1,287,870 + 15648 mRNA_7280 0.39 +0.3
1,287,938 - 15648 mRNA_7280 0.47 -0.1

Or see this region's nucleotide sequence