Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7295

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15662 and 15663 are separated by 279 nucleotides15663 and 15664 are separated by 336 nucleotides mRNA_7294: 15662 - HMMPfam-F-box-like-PF12937, at 1,323,105 to 1,324,702 15662 mRNA_7295: 15663 - K10967 KTR1_3 alpha 1,2-mannosyltransferase, at 1,324,982 to 1,326,744 15663 mRNA_7296: 15664 - Hypothetical Protein, at 1,327,081 to 1,328,233 15664

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,324,029 - 15662 mRNA_7294 0.58 +0.8
1,324,170 - 15662 mRNA_7294 0.67 +0.1
1,324,331 - 15662 mRNA_7294 0.77 +0.8
1,324,335 - 15662 mRNA_7294 0.77 +0.2
1,324,335 - 15662 mRNA_7294 0.77 +1.4
1,324,455 - 15662 mRNA_7294 0.84 +0.3
1,324,456 + 15662 mRNA_7294 0.85 +1.4
1,324,469 - 15662 mRNA_7294 0.85 +0.5
1,324,579 - +0.6
1,324,612 + +0.3
1,324,618 + +0.2
1,324,639 + +0.2
1,324,802 - +0.5
1,324,915 - -0.1
1,324,925 - +1.2
1,324,941 - -1.0
1,324,981 + +0.6
1,325,036 + -0.1
1,325,038 + -0.6
1,325,043 - -2.4
1,325,098 + +0.8
1,325,115 - +1.1
1,325,238 + 15663 mRNA_7295 0.15 +0.6
1,325,243 + 15663 mRNA_7295 0.15 +0.2
1,325,258 - 15663 mRNA_7295 0.16 +0.7
1,325,536 - 15663 mRNA_7295 0.31 -1.1
1,325,691 - 15663 mRNA_7295 0.40 -0.1
1,325,715 - 15663 mRNA_7295 0.42 +1.1
1,325,715 - 15663 mRNA_7295 0.42 +1.2
1,325,717 + 15663 mRNA_7295 0.42 -0.5
1,325,798 + 15663 mRNA_7295 0.46 +0.5
1,325,811 - 15663 mRNA_7295 0.47 +0.5
1,326,291 - 15663 mRNA_7295 0.74 +0.6
1,326,516 + 15663 mRNA_7295 0.87 -0.3
1,326,549 - 15663 mRNA_7295 0.89 +0.0
1,326,742 - +0.1
1,326,742 - +1.5
1,326,742 + +0.7
1,326,744 + +0.2
1,326,747 - -0.5
1,326,838 + +0.9
1,327,130 - +1.2
1,327,240 - 15664 mRNA_7296 0.14 +1.7
1,327,326 - 15664 mRNA_7296 0.21 +0.7
1,327,621 + 15664 mRNA_7296 0.47 -0.8
1,327,735 + 15664 mRNA_7296 0.57 -0.1

Or see this region's nucleotide sequence