Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7298

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15665 and 15666 are separated by 379 nucleotides mRNA_7297: 15665 - Hypothetical Protein, at 1,328,512 to 1,329,745 15665 mRNA_7298: 15666 - Hypothetical Protein, at 1,330,125 to 1,331,364 15666

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,329,209 - 15665 mRNA_7297 0.56 +0.2
1,329,305 - 15665 mRNA_7297 0.64 +1.0
1,329,455 - 15665 mRNA_7297 0.76 +0.1
1,329,474 - 15665 mRNA_7297 0.78 -0.3
1,329,618 - 15665 mRNA_7297 0.90 +0.3
1,329,618 - 15665 mRNA_7297 0.90 +0.2
1,329,618 - 15665 mRNA_7297 0.90 -0.8
1,329,663 + +0.5
1,329,727 - +0.5
1,329,810 + +0.8
1,329,873 + +0.5
1,329,923 - +0.3
1,329,959 + +0.0
1,329,959 + +1.1
1,329,962 - +0.2
1,330,042 + +1.0
1,330,069 + -0.7
1,330,357 - 15666 mRNA_7298 0.19 +0.4
1,330,377 + 15666 mRNA_7298 0.20 +1.5
1,330,473 + 15666 mRNA_7298 0.28 +0.3
1,330,557 - 15666 mRNA_7298 0.35 +0.7
1,330,574 - 15666 mRNA_7298 0.36 -0.3
1,330,636 + 15666 mRNA_7298 0.41 -0.8
1,330,643 + 15666 mRNA_7298 0.42 +0.3
1,330,646 + 15666 mRNA_7298 0.42 +1.2
1,330,696 - 15666 mRNA_7298 0.46 +1.0
1,330,830 + 15666 mRNA_7298 0.57 +0.8
1,330,834 + 15666 mRNA_7298 0.57 +0.0
1,330,959 + 15666 mRNA_7298 0.67 +0.1
1,331,124 - 15666 mRNA_7298 0.81 -0.4
1,331,220 - 15666 mRNA_7298 0.88 +0.0
1,331,292 - +0.4
1,331,368 + -0.9
1,331,369 - +1.1
1,331,456 + -0.4
1,331,681 - +0.3
1,331,821 - +1.9
1,331,980 - +1.5
1,332,131 - -0.8
1,332,173 - +0.1
1,332,187 - +1.4
1,332,283 - -0.9
1,332,319 + +0.3

Or see this region's nucleotide sequence