Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7304

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15671 and 15672 are separated by 594 nucleotides15672 and 15673 are separated by 194 nucleotides mRNA_7303: 15671 - KOG1269 SAM-dependent methyltransferases, at 1,350,964 to 1,351,884 15671 mRNA_7304: 15672 - Hypothetical Protein, at 1,352,479 to 1,355,080 15672 mRNA_7305: 15673 - Hypothetical Protein, at 1,355,275 to 1,355,712 15673

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,351,575 - 15671 mRNA_7303 0.66 +0.1
1,351,588 - 15671 mRNA_7303 0.68 +0.4
1,351,896 - -1.4
1,351,988 + -0.4
1,352,041 + +0.1
1,352,073 + +0.6
1,352,076 - -0.3
1,352,180 + -0.1
1,352,218 + +0.3
1,352,233 - +0.1
1,352,238 - +0.5
1,352,435 - +0.3
1,352,537 - -0.7
1,352,657 + +0.9
1,352,724 - +0.5
1,352,862 - 15672 mRNA_7304 0.15 +0.2
1,352,899 + 15672 mRNA_7304 0.16 +1.6
1,353,127 - 15672 mRNA_7304 0.25 +0.2
1,353,127 - 15672 mRNA_7304 0.25 +0.4
1,353,127 - 15672 mRNA_7304 0.25 +0.2
1,353,127 - 15672 mRNA_7304 0.25 +1.5
1,353,177 - 15672 mRNA_7304 0.27 -0.2
1,353,286 - 15672 mRNA_7304 0.31 -0.0
1,353,307 + 15672 mRNA_7304 0.32 +0.0
1,353,427 + 15672 mRNA_7304 0.36 -0.0
1,353,427 + 15672 mRNA_7304 0.36 +0.8
1,353,427 + 15672 mRNA_7304 0.36 -0.9
1,353,430 - 15672 mRNA_7304 0.37 +0.4
1,353,582 + 15672 mRNA_7304 0.42 +1.2
1,353,585 - 15672 mRNA_7304 0.43 +0.0
1,353,604 - 15672 mRNA_7304 0.43 -0.5
1,353,679 - 15672 mRNA_7304 0.46 -1.2
1,353,689 + 15672 mRNA_7304 0.47 -0.2
1,353,715 + 15672 mRNA_7304 0.48 +0.1
1,353,715 + 15672 mRNA_7304 0.48 +1.0
1,353,772 + 15672 mRNA_7304 0.50 +0.0
1,353,792 - 15672 mRNA_7304 0.50 +1.5
1,353,850 + 15672 mRNA_7304 0.53 +1.0
1,353,877 + 15672 mRNA_7304 0.54 +0.4
1,353,883 + 15672 mRNA_7304 0.54 +1.4
1,353,891 - 15672 mRNA_7304 0.54 -0.1
1,353,893 - 15672 mRNA_7304 0.54 +0.3
1,353,896 + 15672 mRNA_7304 0.54 -0.7
1,353,897 + 15672 mRNA_7304 0.54 -0.1
1,353,949 + 15672 mRNA_7304 0.56 -0.8
1,354,030 - 15672 mRNA_7304 0.60 +0.8
1,354,042 - 15672 mRNA_7304 0.60 +0.2
1,354,088 - 15672 mRNA_7304 0.62 +1.5
1,354,133 + 15672 mRNA_7304 0.64 +0.5
1,354,277 - 15672 mRNA_7304 0.69 +0.8
1,354,334 + 15672 mRNA_7304 0.71 +0.9
1,354,493 + 15672 mRNA_7304 0.77 +0.8
1,354,787 + 15672 mRNA_7304 0.89 -0.7
1,354,793 - 15672 mRNA_7304 0.89 +2.0
1,354,794 - 15672 mRNA_7304 0.89 -0.2
1,354,923 + -0.5
1,354,966 - -0.0
1,354,980 + -0.1
1,355,030 + -0.7
1,355,054 - +0.4
1,355,179 + +0.3
1,355,185 + -0.2
1,355,393 - 15673 mRNA_7305 0.27 +1.5
1,355,434 - 15673 mRNA_7305 0.36 -0.0
1,355,434 - 15673 mRNA_7305 0.36 +0.3
1,355,447 + 15673 mRNA_7305 0.39 +0.3
1,355,492 + 15673 mRNA_7305 0.50 +0.7
1,355,492 + 15673 mRNA_7305 0.50 +3.1
1,355,495 - 15673 mRNA_7305 0.50 +0.0
1,355,587 + 15673 mRNA_7305 0.71 +0.6
1,355,591 + 15673 mRNA_7305 0.72 -0.3
1,355,603 - 15673 mRNA_7305 0.75 +0.1
1,355,614 - 15673 mRNA_7305 0.77 -2.1
1,355,619 - 15673 mRNA_7305 0.79 -2.2
1,355,620 + 15673 mRNA_7305 0.79 -0.3
1,355,630 - 15673 mRNA_7305 0.81 -0.0
1,355,741 - -0.2
1,355,863 + +0.5
1,356,030 - -0.2
1,356,064 - -0.3
1,356,068 + -0.3

Or see this region's nucleotide sequence