Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7320

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15688 and 15689 are separated by 410 nucleotides mRNA_7320: 15688 - BLAST genomic scaffold, msy-sf-7 protein, putative [Rhizoct..., at 106 to 1,532 15688 mRNA_7321: 15689 - KOG1339 Aspartyl protease, at 1,943 to 3,763 15689

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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14 + -0.0
14 + -0.8
14 + -0.2
14 + +0.4
22 + -0.9
29 + +0.1
35 + +0.5
45 + +0.2
66 + -0.5
68 + +1.6
71 - +1.0
105 + +0.6
120 - -0.1
120 + +0.0
121 - +0.2
122 - +0.6
126 + +1.3
126 + -1.0
131 - -0.2
135 - +0.2
135 + -0.3
135 + -0.0
135 + -0.3
135 - +0.4
142 - +0.3
148 + +0.3
153 + -0.1
159 - +0.2
159 - +0.2
161 + +1.5
168 - +0.8
195 + +0.6
233 + +0.9
263 + 15688 mRNA_7320 0.11 +1.5
267 - 15688 mRNA_7320 0.11 +0.3
301 - 15688 mRNA_7320 0.14 +1.0
310 - 15688 mRNA_7320 0.14 +0.6
313 + 15688 mRNA_7320 0.15 +0.8
313 + 15688 mRNA_7320 0.15 +0.2
319 + 15688 mRNA_7320 0.15 -0.3
322 - 15688 mRNA_7320 0.15 +0.3
340 - 15688 mRNA_7320 0.16 -0.1
345 + 15688 mRNA_7320 0.17 +0.5
357 + 15688 mRNA_7320 0.18 +0.1
359 + 15688 mRNA_7320 0.18 +1.5
365 - 15688 mRNA_7320 0.18 +0.7
401 - 15688 mRNA_7320 0.21 +1.1
401 - 15688 mRNA_7320 0.21 +0.2
401 + 15688 mRNA_7320 0.21 +0.3
405 + 15688 mRNA_7320 0.21 -2.3
415 + 15688 mRNA_7320 0.22 +0.5
428 - 15688 mRNA_7320 0.23 +0.3
461 - 15688 mRNA_7320 0.25 -0.8
462 + 15688 mRNA_7320 0.25 +0.6
466 - 15688 mRNA_7320 0.25 +0.2
482 + 15688 mRNA_7320 0.26 -0.1
488 - 15688 mRNA_7320 0.27 +1.5
573 - 15688 mRNA_7320 0.33 -0.6
594 - 15688 mRNA_7320 0.34 -0.1
595 + 15688 mRNA_7320 0.34 +1.6
595 + 15688 mRNA_7320 0.34 +1.6
625 - 15688 mRNA_7320 0.36 +0.2
644 + 15688 mRNA_7320 0.38 +0.9
644 + 15688 mRNA_7320 0.38 -0.8
648 + 15688 mRNA_7320 0.38 -1.2
654 - 15688 mRNA_7320 0.38 +0.2
654 + 15688 mRNA_7320 0.38 -0.0
713 + 15688 mRNA_7320 0.43 +0.2
753 - 15688 mRNA_7320 0.45 -1.0
756 - 15688 mRNA_7320 0.46 +0.4
763 + 15688 mRNA_7320 0.46 +1.6
765 + 15688 mRNA_7320 0.46 -0.2
778 + 15688 mRNA_7320 0.47 +0.8
811 - 15688 mRNA_7320 0.49 +0.4
921 + 15688 mRNA_7320 0.57 +0.3
945 + 15688 mRNA_7320 0.59 +0.5
1,059 + 15688 mRNA_7320 0.67 +0.0
1,167 + 15688 mRNA_7320 0.74 -0.0
1,174 + 15688 mRNA_7320 0.75 +0.7
1,182 - 15688 mRNA_7320 0.75 +0.3
1,196 + 15688 mRNA_7320 0.76 +1.3
1,218 + 15688 mRNA_7320 0.78 +0.4
1,258 + 15688 mRNA_7320 0.81 +0.1
1,326 - 15688 mRNA_7320 0.85 -0.7
1,360 + 15688 mRNA_7320 0.88 +0.7
1,366 + 15688 mRNA_7320 0.88 +0.1
1,497 - -0.2
1,518 + +0.6
1,582 + -0.4
1,666 - -1.0
1,675 + -0.3
1,789 - +0.2
1,907 + +0.7
1,929 + -0.2
1,948 + +0.2
2,105 - +0.6
2,297 - 15689 mRNA_7321 0.19 +0.9
2,508 - 15689 mRNA_7321 0.31 +0.4
2,521 + 15689 mRNA_7321 0.32 -1.5
2,526 + 15689 mRNA_7321 0.32 +0.3
2,529 - 15689 mRNA_7321 0.32 -0.1
2,529 - 15689 mRNA_7321 0.32 +0.4

Or see this region's nucleotide sequence