Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7330

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15697 and 15698 are separated by 516 nucleotides15698 and 15699 are separated by 380 nucleotides mRNA_7329: 15697 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 19,651 to 22,039 15697 mRNA_7330: 15698 - KOG0409 Predicted dehydrogenase, at 22,556 to 24,304 15698 mRNA_7331: 15699 - KOG1666 V-SNARE, at 24,685 to 25,773 15699

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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21,687 + 15697 mRNA_7329 0.85 -0.3
21,838 - +0.5
21,990 + +0.8
21,996 - +0.3
22,283 - +0.4
22,425 - +0.5
22,446 - -0.8
23,344 + 15698 mRNA_7330 0.45 +0.2
23,560 + 15698 mRNA_7330 0.57 -0.4
23,877 + 15698 mRNA_7330 0.76 +1.0
24,463 + +0.8
24,490 + -0.0
24,493 + -0.1
24,495 + +0.6
24,635 - +2.4
24,672 + +0.4
24,676 + -0.0
24,772 - -1.3
24,939 + 15699 mRNA_7331 0.23 +1.5
25,082 + 15699 mRNA_7331 0.36 -0.0
25,245 + 15699 mRNA_7331 0.51 +0.1

Or see this region's nucleotide sequence