Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7352

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15720 and 15721 are separated by 373 nucleotides mRNA_7352: 15720 - Hypothetical Protein, at 73,330 to 74,723 15720 mRNA_7353: 15721 - K00927 PGK, pgk phosphoglycerate kinase, at 75,097 to 76,913 15721

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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72,507 + +0.7
72,509 - +0.1
72,510 + -0.3
72,525 - -0.0
72,532 - +0.1
72,533 + +1.0
72,537 + +0.1
72,545 + -0.2
72,547 + +0.5
72,640 - -0.8
72,648 - +0.4
72,657 - +1.1
72,658 - -1.6
72,658 - +0.6
72,666 + +0.4
72,668 + -0.2
72,701 - -0.8
72,708 + +0.4
72,712 + +0.6
72,716 + -0.3
72,847 - +0.7
72,853 - -0.7
72,855 - -0.0
72,857 - +1.7
72,869 + -0.2
72,871 - +0.5
72,876 + +0.6
72,885 + +0.4
72,911 - -0.2
73,010 - -1.6
73,015 - +0.8
73,039 + +1.2
73,045 + +0.2
73,049 + +0.2
73,151 + +0.8
73,189 - -0.1
73,239 - -0.6
73,914 + 15720 mRNA_7352 0.42 +2.0
74,213 + 15720 mRNA_7352 0.63 +0.1
74,326 - 15720 mRNA_7352 0.71 +0.1
74,373 - 15720 mRNA_7352 0.75 -0.5
74,477 - 15720 mRNA_7352 0.82 -0.7
74,525 + 15720 mRNA_7352 0.86 +0.4
74,636 + +0.2
74,666 + +0.9
74,815 + +0.2
74,840 + +0.7
74,951 - -0.1
74,955 - +0.5
74,955 + -0.3
74,960 - +0.0
74,963 + +0.5
74,963 - +0.3
74,966 + +1.3
74,967 + +0.1
74,969 - +0.4

Or see this region's nucleotide sequence