Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7376

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15743 and 15744 are separated by 295 nucleotides15744 and 15745 are separated by 216 nucleotides mRNA_7375: 15743 - HMMPfam-Chromosome segregation protein Csm1/Pcs1-PF12539, at 126,034 to 127,845 15743 mRNA_7376: 15744 - K19030 PFKFB4 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 4, at 128,141 to 130,355 15744 mRNA_7377: 15745 - KOG1256 Long-chain acyl-CoA synthetases (AMP-forming), at 130,572 to 131,007 15745

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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127,832 + +1.7
127,965 - +1.0
127,973 + +0.8
128,074 + +0.1
128,401 - 15744 mRNA_7376 0.12 +0.6
128,401 - 15744 mRNA_7376 0.12 +0.4
128,543 - 15744 mRNA_7376 0.18 +0.4
128,556 + 15744 mRNA_7376 0.19 +0.9
128,584 + 15744 mRNA_7376 0.20 +0.5
128,684 - 15744 mRNA_7376 0.25 +0.3
129,125 - 15744 mRNA_7376 0.44 +0.1
129,128 + 15744 mRNA_7376 0.45 +0.1
129,137 - 15744 mRNA_7376 0.45 +0.2
129,545 - 15744 mRNA_7376 0.63 +0.2
129,565 + 15744 mRNA_7376 0.64 +0.7
129,848 - 15744 mRNA_7376 0.77 +0.5
130,075 - 15744 mRNA_7376 0.87 +0.4
130,123 - 15744 mRNA_7376 0.89 +0.1
130,132 + 15744 mRNA_7376 0.90 -0.2
130,162 + +2.5
130,418 - +0.9
130,433 - -0.1
130,436 - +2.3
130,444 + +0.3
130,448 + +0.3
130,586 - -0.5
130,595 - -0.3
130,621 + 15745 mRNA_7377 0.11 +0.3
130,623 + 15745 mRNA_7377 0.12 +0.7
130,645 - 15745 mRNA_7377 0.17 +0.2
130,645 + 15745 mRNA_7377 0.17 -0.0
130,658 + 15745 mRNA_7377 0.20 +0.0
130,669 + 15745 mRNA_7377 0.22 -0.4
130,704 + 15745 mRNA_7377 0.30 -0.7
130,726 - 15745 mRNA_7377 0.35 +1.4
130,739 + 15745 mRNA_7377 0.38 +0.5
130,742 + 15745 mRNA_7377 0.39 +0.3
130,743 + 15745 mRNA_7377 0.39 +0.4
130,759 - 15745 mRNA_7377 0.43 +0.1
130,992 - +0.6
131,043 + +1.0
131,139 - +0.0
131,164 - +1.7
131,165 + -0.1
131,292 + +0.3

Or see this region's nucleotide sequence