Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7383

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15750 and 15751 are separated by 694 nucleotides15751 and 15752 are separated by 606 nucleotides mRNA_7382: 15750 - Hypothetical Protein, at 147,562 to 148,955 15750 mRNA_7383: 15751 - K19355 MAN mannan endo-1,4-beta-mannosidase, at 149,650 to 152,306 15751 mRNA_7384: 15752 - K11128 GAR1, NOLA1 H/ACA ribonucleoprotein complex subunit 1, at 152,913 to 154,132 15752

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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148,784 + 15750 mRNA_7382 0.88 +0.2
148,784 + 15750 mRNA_7382 0.88 +1.5
148,808 - 15750 mRNA_7382 0.89 +0.6
148,897 - +0.6
148,908 + +0.4
148,909 + -0.4
148,912 - +0.7
148,918 + -1.4
148,919 - +0.6
148,940 + +0.9
148,974 - +0.4
149,004 + +0.4
149,012 - +1.3
149,023 + +0.4
149,031 + +0.1
149,205 + +1.3
149,241 - +0.8
149,248 - +1.1
149,275 + +0.0
149,353 + +0.3
149,359 + -0.1
149,377 + +0.8
149,389 + +0.8
149,546 + -0.4
149,649 - -0.1
149,652 - +0.4
149,652 - +0.5
149,653 + -0.1
149,655 + +0.7
150,020 - 15751 mRNA_7383 0.14 +0.7
150,389 + 15751 mRNA_7383 0.28 +0.3
150,540 - 15751 mRNA_7383 0.33 -0.0
150,546 - 15751 mRNA_7383 0.34 +1.4
150,831 + 15751 mRNA_7383 0.44 +0.8
151,103 + 15751 mRNA_7383 0.55 +0.8
151,142 - 15751 mRNA_7383 0.56 -0.2
151,362 + 15751 mRNA_7383 0.64 +0.7
151,713 - 15751 mRNA_7383 0.78 +0.2
152,272 - +0.3
152,277 + +0.2
152,289 - +0.1
152,415 + +2.3
152,418 - +0.4
152,422 + +0.2
152,561 + +0.7
152,588 + +0.0
152,595 - -0.2
152,704 + -0.3
152,720 - -0.3
152,723 - +0.0
152,737 - +0.3
152,751 + +1.6
152,870 - +1.3
153,020 + +0.4

Or see this region's nucleotide sequence