Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7411

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15778 and 15779 are separated by 540 nucleotides15779 and 15780 are separated by 207 nucleotides mRNA_7410: 15778 - BLAST capsular associated protein [Coprinopsis cinerea ..., at 214,595 to 216,194 15778 mRNA_7411: 15779 - K02537 MAD2 mitotic spindle assembly checkpoint protein MAD2, at 216,735 to 217,924 15779 mRNA_7412: 15780 - K03596 lepA GTP-binding protein LepA, at 218,132 to 221,123 15780

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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216,276 - +0.3
216,304 - +0.2
216,314 - -0.3
216,325 + +0.8
216,442 - +0.4
216,610 + +0.4
216,758 - +0.1
217,036 + 15779 mRNA_7411 0.25 -1.8
217,053 + 15779 mRNA_7411 0.27 +0.4
217,922 + -0.1
218,534 + 15780 mRNA_7412 0.13 +0.1
218,768 - 15780 mRNA_7412 0.21 -0.7

Or see this region's nucleotide sequence